Here is a list of all functions with links to the classes they belong to:

- f -

• FastaFileIndexer() : pappso::FastaFileIndexer
• fastaFilesReady() : pappso::cbor::psm::PsmCbor2Json, pappso::cbor::psm::PsmFileAppend, pappso::cbor::psm::PsmFileReaderBase, pappso::cbor::psm::PsmFileScanProcessAndCopy
• fastAlign() : pappso::specpeptidoms::SemiGlobalAlignment
• FastaOutputStream() : pappso::FastaOutputStream
• FastaReader() : pappso::FastaReader
• FastaSeq() : pappso::cbor::psm::SageReader::FastaSeq
• fileReaderTypeAsString() : pappso::Utils
• fillAntiSpectrumDataPoint() : pappso::specself::SelfSpectrumDataPoint
• fillComplementaryPeakIndexes() : pappso::specpeptidoms::SpOMSSpectrum
• fillFrameIdDescrList() : pappso::TimsData
• fillMassDelta() : pappso::specglob::SpectralAlignment
• fillMatricesWithScores() : pappso::specglob::SpectralAlignment
• fillMatrix() : pappso::ProteinPresenceAbsenceMatrix
• fillSelfSpectrumDataPoint() : pappso::specself::SelfSpectrumDataPoint
• fillSpectrumDescriptionWithSqlRecord() : pappso::TimsDdaPrecursors
• filter() : pappso::FilterCeilingAmplitudePercentage, pappso::FilterChargeDeconvolution, pappso::FilterComplementIonEnhancer, pappso::FilterFloorAmplitudePercentage, pappso::FilterFloorY, pappso::FilterGreatestY, pappso::FilterGreatestYperWindow, pappso::FilterHighPass, pappso::FilterHighPassPercentage, pappso::FilterInterface, pappso::FilterLocalMaximum, pappso::FilterLowIntensitySignalRemoval, pappso::FilterLowPass, pappso::FilterMorphoAntiSpike, pappso::FilterMorphoBackground, pappso::FilterMorphoMaxMin, pappso::FilterMorphoMinMax, pappso::FilterMorphoWindowBase, pappso::FilterMzExclusion, pappso::FilterNormalizeIntensities, pappso::FilterPeakDelta, pappso::FilterQuantileBasedRemoveY, pappso::FilterRemoveC13, pappso::FilterRemoveY, pappso::FilterResampleKeepGreater, pappso::FilterResampleKeepPointInPolygon, pappso::FilterResampleKeepSmaller, pappso::FilterResampleKeepXRange, pappso::FilterResampleRemoveXRange, pappso::FilterRescaleY, pappso::FilterRoundY, pappso::FilterSavitzkyGolay, pappso::FilterScaleFactorY, pappso::FilterSuite, pappso::FilterSuiteString, pappso::FilterTandemDeisotope, pappso::FilterTriangle, pappso::MassSpectrumFilterGreatestItensities, pappso::MassSpectrumFilterInterface, pappso::MassSpectrumFilterResampleKeepMzRange, pappso::MassSpectrumFilterResampleRemoveMzRange, pappso::TimsMs2CentroidFilter, pappso::Trace
• filterAcceptsRow() : pappso::OboListProxyModel
• FilterCeilingAmplitudePercentage() : pappso::FilterCeilingAmplitudePercentage
• FilterChargeDeconvolution() : pappso::FilterChargeDeconvolution
• filterCodeList() : pappso::AaStringCodeMassMatching
• FilterComplementIonEnhancer() : pappso::FilterComplementIonEnhancer
• filteredData() : pappso::FilterSavitzkyGolay
• FilterFloorAmplitudePercentage() : pappso::FilterFloorAmplitudePercentage
• FilterFloorY() : pappso::FilterFloorY
• FilterGreatestY() : pappso::FilterGreatestY
• FilterGreatestYperWindow() : pappso::FilterGreatestYperWindow
• FilterHighPass() : pappso::FilterHighPass
• FilterHighPassPercentage() : pappso::FilterHighPassPercentage
• FilterLocalMaximum() : pappso::FilterLocalMaximum
• FilterLowIntensitySignalRemoval() : pappso::FilterLowIntensitySignalRemoval
• FilterLowPass() : pappso::FilterLowPass
• filterMassSpectrum() : pappso::cbor::psm::PsmSpecGlob, pappso::cbor::psm::PsmSpecPeptidOms
• FilterMorphoAntiSpike() : pappso::FilterMorphoAntiSpike
• FilterMorphoBackground() : pappso::FilterMorphoBackground
• FilterMorphoMax() : pappso::FilterMorphoMax
• FilterMorphoMaxMin() : pappso::FilterMorphoMaxMin
• FilterMorphoMean() : pappso::FilterMorphoMean
• FilterMorphoMedian() : pappso::FilterMorphoMedian
• FilterMorphoMin() : pappso::FilterMorphoMin
• FilterMorphoMinMax() : pappso::FilterMorphoMinMax
• FilterMorphoSum() : pappso::FilterMorphoSum
• FilterMorphoWindowBase() : pappso::FilterMorphoWindowBase
• FilterMzExclusion() : pappso::FilterMzExclusion
• filterMzPrecision() : pappso::OboListProxyModel, pappso::OboListWidget
• FilterNormalizeIntensities() : pappso::FilterNormalizeIntensities
• FilterOboPsiModMap() : pappso::FilterOboPsiModMap
• FilterOboPsiModSink() : pappso::FilterOboPsiModSink
• FilterOboPsiModTermAccession() : pappso::FilterOboPsiModTermAccession
• FilterOboPsiModTermDiffMono() : pappso::FilterOboPsiModTermDiffMono
• FilterOboPsiModTermLabel() : pappso::FilterOboPsiModTermLabel
• FilterOboPsiModTermName() : pappso::FilterOboPsiModTermName
• FilterPeakDelta() : pappso::FilterPeakDelta
• FilterQuantileBasedRemoveY() : pappso::FilterQuantileBasedRemoveY
• FilterRemoveC13() : pappso::FilterRemoveC13
• FilterRemoveY() : pappso::FilterRemoveY
• FilterResampleKeepGreater() : pappso::FilterResampleKeepGreater
• FilterResampleKeepPointInPolygon() : pappso::FilterResampleKeepPointInPolygon
• FilterResampleKeepSmaller() : pappso::FilterResampleKeepSmaller
• FilterResampleKeepXRange() : pappso::FilterResampleKeepXRange
• FilterResampleRemoveXRange() : pappso::FilterResampleRemoveXRange
• FilterRescaleY() : pappso::FilterRescaleY
• FilterRoundY() : pappso::FilterRoundY
• FilterSavitzkyGolay() : pappso::FilterSavitzkyGolay
• FilterScaleFactorY() : pappso::FilterScaleFactorY
• FilterSuite() : pappso::FilterSuite
• FilterSuiteString() : pappso::FilterSuiteString
• filterSum() : pappso::MassSpectrum
• FilterTandemDeisotope() : pappso::FilterTandemDeisotope
• FilterTriangle() : pappso::FilterTriangle
• findBetterPeptideModel() : pappso::specglob::PostTreatment
• findBin() : pappso::MassSpectrumCombiner
• findComplementIonPairs() : pappso::PsmFeatures
• findIntegrationLowerRangeForKey() : pappso::BaseTracePlotWidget
• findMz() : pappso::specglob::ExperimentalSpectrum
• findNode() : pappso::MsRunDataSetTree, pappso::MsRunDataSetTreeNode
• findReplaceMutations() : pappso::specglob::PostTreatment
• flattenedView() : pappso::MsRunDataSetTree, pappso::MsRunDataSetTreeNode
• flattenedViewChildrenOnly() : pappso::MsRunDataSetTreeNode
• flattenedViewMsLevel() : pappso::MsRunDataSetTree
• flattenedViewMsLevelNodes() : pappso::MsRunDataSetTreeNode
• flushBufferOnDisk() : pappso::MsRunXicExtractorDiskBuffer
• flushChromatogramTraces() : pappso::masschroq::MsRunPeptideList
• flushXics() : pappso::masschroq::PeptideMeasurementsBase
• forwardFindApex() : pappso::FilterLowIntensitySignalRemoval
• four1() : pappso::FilterSavitzkyGolay
• free_dmatrix() : pappso::FilterSavitzkyGolay
• free_dvector() : pappso::FilterSavitzkyGolay
• free_ivector() : pappso::FilterSavitzkyGolay
• fromString() : pappso::PrecisionFactory
• front() : pappso::spectree::Bucket