pappso::FilterOboPsiModSink Class Reference

#include <filterobopsimodsink.h>

Inheritance diagram for pappso::FilterOboPsiModSink:

Public Member Functions
	FilterOboPsiModSink ()
virtual	~FilterOboPsiModSink ()
void	setOboPsiModTerm (const OboPsiModTerm &term) override
	triggered function on each obo term when parsing obo file
const OboPsiModTerm &	getOne ()
const OboPsiModTerm &	getFirst ()
std::size_t	size ()
const std::list< OboPsiModTerm > &	getOboPsiModTermList ()

Private Attributes
std::list< OboPsiModTerm >	m_oboPsiModTermList

Detailed Description

Definition at line 35 of file filterobopsimodsink.h.

Constructor & Destructor Documentation

FilterOboPsiModSink()

pappso::FilterOboPsiModSink::FilterOboPsiModSink

(

)

Definition at line 29 of file filterobopsimodsink.cpp.

{
}

~FilterOboPsiModSink()

pappso::FilterOboPsiModSink::~FilterOboPsiModSink ( )

virtual

Definition at line 33 of file filterobopsimodsink.cpp.

{
}

Member Function Documentation

getFirst()

const OboPsiModTerm & pappso::FilterOboPsiModSink::getFirst

(

)

Definition at line 68 of file filterobopsimodsink.cpp.

{
  if(m_oboPsiModTermList.size() == 0)
    {
      throw ExceptionNotFound(QObject::tr("OBO term list is empty"));
    }
  else
    {
      return *m_oboPsiModTermList.begin();
    }
}

References m_oboPsiModTermList.

Referenced by pappso::PeptideStrParser::parseStringToPeptide().

getOboPsiModTermList()

const std::list< OboPsiModTerm > & pappso::FilterOboPsiModSink::getOboPsiModTermList

(

)

Definition at line 38 of file filterobopsimodsink.cpp.

{
  return m_oboPsiModTermList;
}

References m_oboPsiModTermList.

getOne()

const OboPsiModTerm & pappso::FilterOboPsiModSink::getOne

(

)

Definition at line 50 of file filterobopsimodsink.cpp.

{
  if(m_oboPsiModTermList.size() == 1)
    {
      return *m_oboPsiModTermList.begin();
    }
  if(m_oboPsiModTermList.size() == 0)
    {
      throw ExceptionNotFound(QObject::tr("OBO term list is empty"));
    }
  else
    {
      throw ExceptionNotFound(
        QObject::tr("Too much OBO terms in list (size = %1)").arg(m_oboPsiModTermList.size()));
    }
}

References m_oboPsiModTermList.

Referenced by pappso::AaModification::createInstance().

setOboPsiModTerm()

void pappso::FilterOboPsiModSink::setOboPsiModTerm ( const OboPsiModTerm & term )

overridevirtual

triggered function on each obo term when parsing obo file

Implements pappso::OboPsiModHandlerInterface.

Definition at line 44 of file filterobopsimodsink.cpp.

{
  m_oboPsiModTermList.push_back(term);
}

References m_oboPsiModTermList.

size()

std::size_t pappso::FilterOboPsiModSink::size

(

)

Definition at line 83 of file filterobopsimodsink.cpp.

{
  return m_oboPsiModTermList.size();
}

References m_oboPsiModTermList.

Member Data Documentation

m_oboPsiModTermList

std::list<OboPsiModTerm> pappso::FilterOboPsiModSink::m_oboPsiModTermList

private

Definition at line 52 of file filterobopsimodsink.h.

Referenced by getFirst(), getOboPsiModTermList(), getOne(), setOboPsiModTerm(), and size().

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The documentation for this class was generated from the following files:

• pappsomspp/core/obo/filterobopsimodsink.h
• pappsomspp/core/obo/filterobopsimodsink.cpp