#include <filterobopsimodmap.h>

Inheritance diagram for pappso::FilterOboPsiModMap:

Public Member Functions
	FilterOboPsiModMap ()

virtual	~FilterOboPsiModMap ()

virtual void	setOboPsiModTerm (const OboPsiModTerm &term) override
	triggered function on each obo term when parsing obo file

const OboPsiModTerm &	getOboPsiModTermWithAccession (const QString &accession) const

const OboPsiModTerm &	getOboPsiModTermWithName (const QString &name) const
	get the first occurence of term with this name

Private Attributes
std::map< QString, const OboPsiModTerm >	m_mapOboPsiModTerm

Detailed Description

Definition at line 37 of file filterobopsimodmap.h.

Constructor & Destructor Documentation

◆ FilterOboPsiModMap()

pappso::FilterOboPsiModMap::FilterOboPsiModMap ( )

Definition at line 33 of file filterobopsimodmap.cpp.

34{

35}

◆ ~FilterOboPsiModMap()

pappso::FilterOboPsiModMap::~FilterOboPsiModMap ( )

virtual

Destructor

Definition at line 38 of file filterobopsimodmap.cpp.

39{

40}

Member Function Documentation

◆ getOboPsiModTermWithAccession()

const pappso::OboPsiModTerm & pappso::FilterOboPsiModMap::getOboPsiModTermWithAccession ( const QString & accession ) const

Definition at line 49 of file filterobopsimodmap.cpp.

{
  auto it = m_mapOboPsiModTerm.find(accession);
  if(it == m_mapOboPsiModTerm.end())
    {
      throw pappso::ExceptionNotFound(
        QObject::tr("OBO term accession %1 not found").arg(accession));
    }
  return it->second;
}

References m_mapOboPsiModTerm.

Referenced by pappso::AaModification::createInstance(), pappso::PwizMsRunReader::getOboPsiModTermInstrumentModelName(), and pappso::TimsMsRunReaderBase::getOboPsiModTermInstrumentModelName().

◆ getOboPsiModTermWithName()

const pappso::OboPsiModTerm & pappso::FilterOboPsiModMap::getOboPsiModTermWithName ( const QString & name ) const

get the first occurence of term with this name

Warning: not reliable, it does not check for unicity

Definition at line 61 of file filterobopsimodmap.cpp.

{
  for(auto &pair_term : m_mapOboPsiModTerm)
    {
      if(pair_term.second.m_name == name)
        return pair_term.second;
    }
  throw pappso::ExceptionNotFound(QObject::tr("OBO term name %1 not found").arg(name));
}

References m_mapOboPsiModTerm.

Referenced by pappso::AaModification::createInstance().

◆ setOboPsiModTerm()

void pappso::FilterOboPsiModMap::setOboPsiModTerm ( const OboPsiModTerm & term )

overridevirtual

triggered function on each obo term when parsing obo file

Implements pappso::OboPsiModHandlerInterface.

Definition at line 43 of file filterobopsimodmap.cpp.

{
  m_mapOboPsiModTerm.insert({term.getAccession(), term});
}

References pappso::OboPsiModTerm::getAccession(), and m_mapOboPsiModTerm.

Member Data Documentation

◆ m_mapOboPsiModTerm

std::map<QString, const OboPsiModTerm> pappso::FilterOboPsiModMap::m_mapOboPsiModTerm

private

Definition at line 57 of file filterobopsimodmap.h.

Referenced by getOboPsiModTermWithAccession(), getOboPsiModTermWithName(), and setOboPsiModTerm().

The documentation for this class was generated from the following files:

pappsomspp/core/obo/filterobopsimodmap.h
pappsomspp/core/obo/filterobopsimodmap.cpp

Public Member Functions

Private Attributes