libpappsomspp
Library for mass spectrometry
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pappso::FilterMorphoAntiSpike Class Reference

anti spike filter set to zero alone values inside the window More...

#include <filtermorpho.h>

Inheritance diagram for pappso::FilterMorphoAntiSpike:
pappso::FilterNameInterface pappso::FilterInterface

Public Member Functions

 FilterMorphoAntiSpike (std::size_t half_window_size)
 
 FilterMorphoAntiSpike (const QString &strBuildParams)
 
 FilterMorphoAntiSpike (const FilterMorphoAntiSpike &other)
 
virtual ~FilterMorphoAntiSpike ()
 
FilterMorphoAntiSpikeoperator= (const FilterMorphoAntiSpike &other)
 
Tracefilter (Trace &data_points) const override
 
std::size_t getHalfWindowSize () const
 
QString toString () const override
 
QString name () const override
 
- Public Member Functions inherited from pappso::FilterNameInterface
virtual ~FilterNameInterface ()
 
- Public Member Functions inherited from pappso::FilterInterface
virtual ~FilterInterface ()
 

Protected Member Functions

void buildFilterFromString (const QString &strBuildParams) override
 build this filter using a string
 

Private Attributes

std::size_t m_halfWindowSize = 0
 

Detailed Description

anti spike filter set to zero alone values inside the window

Definition at line 168 of file filtermorpho.h.

Constructor & Destructor Documentation

◆ FilterMorphoAntiSpike() [1/3]

FilterMorphoAntiSpike::FilterMorphoAntiSpike ( std::size_t half_window_size)

Definition at line 273 of file filtermorpho.cpp.

274 : m_halfWindowSize(half_window_size)
275{
276}

References m_halfWindowSize.

Referenced by FilterMorphoAntiSpike(), and operator=().

◆ FilterMorphoAntiSpike() [2/3]

pappso::FilterMorphoAntiSpike::FilterMorphoAntiSpike ( const QString & strBuildParams)
Parameters
strBuildParamsstring to build the filter "antiSpike|2"

Definition at line 283 of file filtermorpho.cpp.

284{
285 buildFilterFromString(strBuildParams);
286}
void buildFilterFromString(const QString &strBuildParams) override
build this filter using a string

References buildFilterFromString().

◆ FilterMorphoAntiSpike() [3/3]

FilterMorphoAntiSpike::FilterMorphoAntiSpike ( const FilterMorphoAntiSpike & other)

Definition at line 278 of file filtermorpho.cpp.

280{
281}

References FilterMorphoAntiSpike(), and m_halfWindowSize.

◆ ~FilterMorphoAntiSpike()

virtual pappso::FilterMorphoAntiSpike::~FilterMorphoAntiSpike ( )
inlinevirtual

Definition at line 180 of file filtermorpho.h.

180{};

Member Function Documentation

◆ buildFilterFromString()

void pappso::FilterMorphoAntiSpike::buildFilterFromString ( const QString & strBuildParams)
overrideprotectedvirtual

build this filter using a string

Parameters
strBuildParamsa string coding the filter and its parameters "filterName|param1;param2;param3"

Implements pappso::FilterNameInterface.

Definition at line 289 of file filtermorpho.cpp.

290{
291 //"antiSpike|2"
292 if(strBuildParams.startsWith("antiSpike|"))
293 {
294 QStringList params = strBuildParams.split("|").back().split(";");
295
296 m_halfWindowSize = params.at(0).toUInt();
297 }
298 else
299 {
300 throw pappso::ExceptionNotRecognized(
301 QString("building FilterMorphoAntiSpike from string %1 is not possible")
302 .arg(strBuildParams));
303 }
304}

References m_halfWindowSize.

Referenced by FilterMorphoAntiSpike().

◆ filter()

Trace & FilterMorphoAntiSpike::filter ( Trace & data_points) const
overridevirtual

Implements pappso::FilterInterface.

Definition at line 335 of file filtermorpho.cpp.

336{
337 // qDebug();
338 if(m_halfWindowSize == 0)
339 return data_points;
340 if(data_points.size() < m_halfWindowSize)
341 return data_points;
342 Trace old_trace(data_points);
343 auto it = old_trace.begin();
344 auto it_target = data_points.begin();
345 auto itw = old_trace.begin();
346
347 auto itend = old_trace.end() - m_halfWindowSize - 1;
348 // new_trace.reserve(data_points.size());
349
350 // qDebug();
351 while((it != old_trace.end()) && (std::distance(old_trace.begin(), it) < (int)m_halfWindowSize))
352 {
353 // no anti spike at the begining of the signal
354 it++;
355 it_target++;
356 }
357 // qDebug();
358 while((it != itend) && (it != old_trace.end()))
359 {
360 // qDebug();
361 auto itwend = it + m_halfWindowSize + 1;
362 itw = findDifferentYvalue(it - m_halfWindowSize, it + 1, 0);
363 if(itw == it)
364 {
365 // qDebug();
366 itw = findDifferentYvalue(it + 1, itwend, 0);
367 if(itw == itwend)
368 {
369 it_target->y = 0;
370 }
371 // qDebug();
372 }
373
374 // qDebug();
375 it++;
376 it_target++;
377 }
378
379 return data_points;
380}
std::vector< DataPoint >::iterator findDifferentYvalue(std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &y_value)
find the first element in which Y is different of value
Definition trace.cpp:126

References pappso::findDifferentYvalue(), and m_halfWindowSize.

◆ getHalfWindowSize()

std::size_t FilterMorphoAntiSpike::getHalfWindowSize ( ) const

Definition at line 330 of file filtermorpho.cpp.

331{
332 return m_halfWindowSize;
333}

References m_halfWindowSize.

◆ name()

QString pappso::FilterMorphoAntiSpike::name ( ) const
overridevirtual

Implements pappso::FilterNameInterface.

Definition at line 315 of file filtermorpho.cpp.

316{
317 return "antiSpike";
318}

◆ operator=()

FilterMorphoAntiSpike & FilterMorphoAntiSpike::operator= ( const FilterMorphoAntiSpike & other)

Definition at line 322 of file filtermorpho.cpp.

323{
325
326 return *this;
327}

References FilterMorphoAntiSpike(), and m_halfWindowSize.

◆ toString()

QString pappso::FilterMorphoAntiSpike::toString ( ) const
overridevirtual

Implements pappso::FilterNameInterface.

Definition at line 307 of file filtermorpho.cpp.

308{
309 QString strCode = QString("antiSpike|%1").arg(m_halfWindowSize);
310
311 return strCode;
312}

References m_halfWindowSize.

Member Data Documentation

◆ m_halfWindowSize

std::size_t pappso::FilterMorphoAntiSpike::m_halfWindowSize = 0
private

The documentation for this class was generated from the following files: