pappso::MassSpectrumCombiner Class Reference

#include <massspectrumcombiner.h>

Inheritance diagram for pappso::MassSpectrumCombiner:

Public Member Functions
	MassSpectrumCombiner ()
	Construct an uninitialized instance.
	MassSpectrumCombiner (int decimal_places)
	MassSpectrumCombiner (std::vector< pappso_double > bins, int decimalPlaces=-1)
	MassSpectrumCombiner (MassSpectrumCombinerCstSPtr other)
	MassSpectrumCombiner (const MassSpectrumCombiner &other)
	MassSpectrumCombiner (const MassSpectrumCombiner &&other)
virtual	~MassSpectrumCombiner ()
	Destruct the instance.
void	setBins (std::vector< pappso_double > bins)
const std::vector< pappso_double > &	getBins () const
std::size_t	binCount () const
QString	binsAsString () const
Public Member Functions inherited from pappso::MassDataCombinerInterface
	MassDataCombinerInterface (int decimal_places=-1)
virtual	~MassDataCombinerInterface ()
void	setDecimalPlaces (int value)
int	getDecimalPlaces () const
virtual MapTrace &	combine (MapTrace &map_trace, Iterator begin, Iterator end)
virtual MapTrace &	combine (MapTrace &map_trace, const Trace &trace) const =0
virtual MapTrace &	combine (MapTrace &map_trace_out, const MapTrace &map_trace_in) const =0

Protected Member Functions
std::vector< pappso_double >::iterator	findBin (pappso_double mz)
	Find the bin that will contain mz.

Protected Attributes
std::vector< pappso_double >	m_bins
Protected Attributes inherited from pappso::MassDataCombinerInterface
int	m_decimalPlaces = -1
	Number of decimals to use for the keys (x values)

Additional Inherited Members
Public Types inherited from pappso::MassDataCombinerInterface
using	Iterator = std::vector<const Trace *>::const_iterator

Detailed Description

Definition at line 28 of file massspectrumcombiner.h.

Constructor & Destructor Documentation

MassSpectrumCombiner() [1/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner

(

)

Construct an uninitialized instance.

Definition at line 28 of file massspectrumcombiner.cpp.

{
}

Referenced by MassSpectrumCombiner(), MassSpectrumCombiner(), pappso::MassSpectrumMinusCombiner::MassSpectrumMinusCombiner(), pappso::MassSpectrumMinusCombiner::MassSpectrumMinusCombiner(), pappso::MassSpectrumMinusCombiner::MassSpectrumMinusCombiner(), pappso::MassSpectrumPlusCombiner::MassSpectrumPlusCombiner(), pappso::MassSpectrumPlusCombiner::MassSpectrumPlusCombiner(), and pappso::MassSpectrumPlusCombiner::MassSpectrumPlusCombiner().

MassSpectrumCombiner() [2/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner

(

int

decimal_places

)

Definition at line 33 of file massspectrumcombiner.cpp.

  : MassDataCombinerInterface(decimal_places)
{
}

References pappso::MassDataCombinerInterface::MassDataCombinerInterface().

MassSpectrumCombiner() [3/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner	(	std::vector< pappso_double >	bins,
		int	decimalPlaces = -1 )

Definition at line 39 of file massspectrumcombiner.cpp.

  : MassDataCombinerInterface(decimalPlaces)
{
  m_bins.assign(bins.begin(), bins.end());
}

References pappso::MassDataCombinerInterface::MassDataCombinerInterface(), and m_bins.

MassSpectrumCombiner() [4/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner

(

MassSpectrumCombinerCstSPtr

other

)

Definition at line 67 of file massspectrumcombiner.cpp.

  : MassDataCombinerInterface(other->m_decimalPlaces)
{
  m_bins.assign(other->m_bins.begin(), other->m_bins.end());
}

References pappso::MassDataCombinerInterface::MassDataCombinerInterface(), m_bins, and pappso::MassDataCombinerInterface::m_decimalPlaces.

MassSpectrumCombiner() [5/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner

(

const MassSpectrumCombiner &

other

)

Definition at line 47 of file massspectrumcombiner.cpp.

  : MassDataCombinerInterface(other.m_decimalPlaces)
{
  m_bins.assign(other.m_bins.begin(), other.m_bins.end());
 
  // QString debug_string = QString(
  //"Number of bins: %1\n"
  //"First bins: %2 %3 %4 -- Last bins: %5 %6 %7\n")
  //.arg(m_bins.size())
  //.arg(m_bins[0], 0, 'f', 6)
  //.arg(m_bins[1], 0, 'f', 6)
  //.arg(m_bins[2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 3], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 1], 0, 'f', 6);
 
  // qDebug().noquote() << debug_string;
}

References pappso::MassDataCombinerInterface::MassDataCombinerInterface(), MassSpectrumCombiner(), m_bins, and pappso::MassDataCombinerInterface::m_decimalPlaces.

MassSpectrumCombiner() [6/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner

(

const MassSpectrumCombiner &&

other

)

References MassSpectrumCombiner(), binCount(), binsAsString(), getBins(), and setBins().

~MassSpectrumCombiner()

pappso::MassSpectrumCombiner::~MassSpectrumCombiner ( )

virtual

Destruct the instance.

Definition at line 75 of file massspectrumcombiner.cpp.

{
  m_bins.clear();
}

References m_bins.

Member Function Documentation

binCount()

std::size_t pappso::MassSpectrumCombiner::binCount

(

)

const

Definition at line 109 of file massspectrumcombiner.cpp.

{
  return m_bins.size();
}

References m_bins.

Referenced by MassSpectrumCombiner().

binsAsString()

QString pappso::MassSpectrumCombiner::binsAsString

(

)

const

Definition at line 126 of file massspectrumcombiner.cpp.

{
  QString text;
 
  for(auto &bin : m_bins)
    text += QString("%1\n").arg(bin, 0, 'f', 6);
 
  text += "\n";
 
  return text;
}

References m_bins.

Referenced by MassSpectrumCombiner().

findBin()

std::vector< pappso_double >::iterator pappso::MassSpectrumCombiner::findBin ( pappso_double mz )

protected

Find the bin that will contain mz.

Definition at line 117 of file massspectrumcombiner.cpp.

{
  return std::find_if(m_bins.begin(), m_bins.end(), [mz](pappso_double bin) {
    return (mz <= bin);
  });
}

References m_bins.

getBins()

const std::vector< pappso_double > & pappso::MassSpectrumCombiner::getBins

(

)

const

Definition at line 102 of file massspectrumcombiner.cpp.

{
  return m_bins;
}

References m_bins.

Referenced by MassSpectrumCombiner().

setBins()

void pappso::MassSpectrumCombiner::setBins

(

std::vector< pappso_double >

bins

)

Definition at line 82 of file massspectrumcombiner.cpp.

{
  m_bins.assign(bins.begin(), bins.end());
 
  // QString debug_string = QString(
  //"Number of bins: %1\n"
  //"First bins: %2 %3 %4 -- Last bins: %5 %6 %7\n")
  //.arg(m_bins.size())
  //.arg(m_bins[0], 0, 'f', 6)
  //.arg(m_bins[1], 0, 'f', 6)
  //.arg(m_bins[2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 3], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 1], 0, 'f', 6);
 
  // qDebug().noquote() << debug_string;
}

References m_bins.

Referenced by MassSpectrumCombiner().

Member Data Documentation

m_bins

std::vector<pappso_double> pappso::MassSpectrumCombiner::m_bins

protected

Definition at line 48 of file massspectrumcombiner.h.

Referenced by MassSpectrumCombiner(), MassSpectrumCombiner(), MassSpectrumCombiner(), ~MassSpectrumCombiner(), binCount(), binsAsString(), pappso::MassSpectrumMinusCombiner::combine(), pappso::MassSpectrumPlusCombiner::combine(), findBin(), getBins(), pappso::MassSpectrumMinusCombiner::operator=(), pappso::MassSpectrumPlusCombiner::operator=(), and setBins().

---

The documentation for this class was generated from the following files:

• pappsomspp/core/processing/combiners/massspectrumcombiner.h
• pappsomspp/core/processing/combiners/massspectrumcombiner.cpp