trace.cpp File Reference

#include <numeric>
#include <limits>
#include <qnamespace.h>
#include <vector>
#include <map>
#include <cmath>
#include <algorithm>
#include <iostream>
#include <iomanip>
#include <QDebug>
#include <QObject>
#include "pappsomspp/core/utils.h"
#include "trace.h"
#include "maptrace.h"
#include "pappsomspp/core/processing/combiners/tracepluscombiner.h"
#include "pappsomspp/core/processing/combiners/traceminuscombiner.h"
#include "pappsomspp/core/types.h"
#include "pappsomspp/core/pappsoexception.h"
#include "pappsomspp/core/exception/exceptionoutofrange.h"
#include "pappsomspp/core/exception/exceptionnotpossible.h"
#include "pappsomspp/core/processing/filters/filterresample.h"
#include "pappsomspp/core/processing/filters/filterpass.h"

Go to the source code of this file.

Namespaces
namespace	pappso
	tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multicharge peaks to monocharge

Functions
PMSPP_LIB_DECL QDataStream &	pappso::operator<< (QDataStream &out, const Trace &trace)
PMSPP_LIB_DECL QDataStream &	pappso::operator>> (QDataStream &out, Trace &trace)
std::vector< DataPoint >::iterator	pappso::findFirstEqualOrGreaterX (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &value)
	find the first element in which X is equal or greater than the value searched important : it implies that Trace is sorted by X
std::vector< DataPoint >::const_iterator	pappso::findFirstEqualOrGreaterX (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &value)
std::vector< DataPoint >::iterator	pappso::findFirstGreaterX (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &value)
	find the first element in which X is greater than the value searched important : it implies that Trace is sorted by X
std::vector< DataPoint >::const_iterator	pappso::findFirstGreaterX (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &value)
std::vector< DataPoint >::iterator	pappso::findDifferentYvalue (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &y_value)
	find the first element in which Y is different of value
std::vector< DataPoint >::const_iterator	pappso::findDifferentYvalue (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &y_value)
std::vector< DataPoint >::const_iterator	pappso::minYDataPoint (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
std::vector< DataPoint >::iterator	pappso::minYDataPoint (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end)
	find the element with the smallest Y value (intensity)
std::vector< DataPoint >::const_iterator	pappso::maxYDataPoint (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
std::vector< DataPoint >::iterator	pappso::maxYDataPoint (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end)
	find the element with the greatest Y value (intensity)
std::vector< DataPoint >::const_iterator	pappso::moveLowerYRigthDataPoint (const Trace &trace, std::vector< DataPoint >::const_iterator begin)
	Move right to the lower value.
std::vector< DataPoint >::const_iterator	pappso::moveLowerYLeftDataPoint (const Trace &trace, std::vector< DataPoint >::const_iterator begin)
	Move left to the lower value.
double	pappso::sumYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double init)
	calculate the sum of y value of a trace
double	pappso::meanYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
	calculate the mean of y value of a trace
double	pappso::quantileYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double quantile)
	calculate the quantile of y value of a trace
double	pappso::medianYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
	calculate the median of y value of a trace
double	pappso::areaTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
	calculate the area of a trace
Trace	pappso::flooredLocalMaxima (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double y_floor)

Variables
int	traceMetaTypeId = qRegisterMetaType<pappso::Trace>("pappso::Trace")
int	tracePtrMetaTypeId = qRegisterMetaType<pappso::Trace *>("pappso::Trace *")

Variable Documentation

traceMetaTypeId

int traceMetaTypeId = qRegisterMetaType<pappso::Trace>("pappso::Trace")

Definition at line 27 of file trace.cpp.

Referenced by Q_DECLARE_METATYPE().

tracePtrMetaTypeId

int tracePtrMetaTypeId = qRegisterMetaType<pappso::Trace *>("pappso::Trace *")

Definition at line 28 of file trace.cpp.

Referenced by Q_DECLARE_METATYPE().