trace.h File Reference

#include <vector>
#include <memory>
#include <QDataStream>
#include "pappsomspp/export-import-config.h"
#include "pappsomspp/core/types.h"
#include "datapoint.h"
#include "pappsomspp/core/mzrange.h"
#include "pappsomspp/core/processing/filters/filterinterface.h"

Go to the source code of this file.

Classes
class	pappso::Trace
	A simple container of DataPoint instances. More...

Namespaces
namespace	pappso
	tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multicharge peaks to monocharge

Typedefs
typedef std::shared_ptr< Trace >	pappso::TraceSPtr
typedef std::shared_ptr< const Trace >	pappso::TraceCstSPtr

Functions
PMSPP_LIB_DECL QDataStream &	pappso::operator<< (QDataStream &out, const Trace &trace)
PMSPP_LIB_DECL QDataStream &	pappso::operator>> (QDataStream &out, Trace &trace)
std::vector< DataPoint >::iterator	pappso::findFirstEqualOrGreaterX (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &value)
	find the first element in which X is equal or greater than the value searched important : it implies that Trace is sorted by X
std::vector< DataPoint >::const_iterator	pappso::findFirstEqualOrGreaterX (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &value)
std::vector< DataPoint >::iterator	pappso::findDifferentYvalue (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &y_value)
	find the first element in which Y is different of value
std::vector< DataPoint >::const_iterator	pappso::findDifferentYvalue (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &y_value)
std::vector< DataPoint >::iterator	pappso::findFirstGreaterX (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &value)
	find the first element in which X is greater than the value searched important : it implies that Trace is sorted by X
std::vector< DataPoint >::const_iterator	pappso::findFirstGreaterX (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &value)
std::vector< DataPoint >::iterator	pappso::minYDataPoint (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end)
	find the element with the smallest Y value (intensity)
std::vector< DataPoint >::const_iterator	pappso::minYDataPoint (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
std::vector< DataPoint >::iterator	pappso::maxYDataPoint (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end)
	find the element with the greatest Y value (intensity)
std::vector< DataPoint >::const_iterator	pappso::maxYDataPoint (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
std::vector< DataPoint >::const_iterator	pappso::moveLowerYRigthDataPoint (const Trace &trace, std::vector< DataPoint >::const_iterator begin)
	Move right to the lower value.
std::vector< DataPoint >::const_iterator	pappso::moveLowerYLeftDataPoint (const Trace &trace, std::vector< DataPoint >::const_iterator begin)
	Move left to the lower value.
double	pappso::sumYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double init)
	calculate the sum of y value of a trace
double	pappso::meanYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
	calculate the mean of y value of a trace
double	pappso::medianYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
	calculate the median of y value of a trace
double	pappso::quantileYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double quantile)
	calculate the quantile of y value of a trace
double	pappso::areaTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
	calculate the area of a trace
Trace	pappso::flooredLocalMaxima (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double y_floor)
	Q_DECLARE_METATYPE (pappso::Trace)
	Q_DECLARE_METATYPE (pappso::Trace *)

Variables
int	traceMetaTypeId
int	tracePtrMetaTypeId

Function Documentation

Q_DECLARE_METATYPE() [1/2]

Q_DECLARE_METATYPE

(

pappso::Trace *

)

References traceMetaTypeId, and tracePtrMetaTypeId.

Q_DECLARE_METATYPE() [2/2]

Q_DECLARE_METATYPE

(

pappso::Trace

)

Variable Documentation

traceMetaTypeId

int traceMetaTypeId

extern

Definition at line 27 of file trace.cpp.

Referenced by Q_DECLARE_METATYPE().

tracePtrMetaTypeId

int tracePtrMetaTypeId

extern

Definition at line 28 of file trace.cpp.

Referenced by Q_DECLARE_METATYPE().