Here is a list of all class members with links to the classes they belong to:

- r -

• r_peak : pappso::specpeptidoms::AaPosition
• raise() : pappso::PappsoException
• range() : pappso::IntegrationScope, pappso::IntegrationScopeBase, pappso::IntegrationScopeRect, pappso::IntegrationScopeRhomb, pappso::SelectionPolygon
• rangeX() : pappso::SelectionPolygon
• rangeY() : pappso::SelectionPolygon
• rank : pappso::cbor::psm::SageTsvHandler::Line
• rawReaderSpectrumCollectionByMsLevel() : pappso::TimsDdaPrecursors
• rbegin() : pappso::Peptide
• read() : pappso::cbor::psm::SageReader, pappso::XmlStreamReaderInterface
• read_msrun_peptide_observations() : pappso::masschroq::JsonInput
• read_note() : pappso::XtandemPresetReader
• read_peptide_list() : pappso::masschroq::JsonInput
• read_protein_list() : pappso::masschroq::JsonInput
• readAction() : pappso::masschroq::JsonInput
• readAlignmentMethodSp() : pappso::masschroq::JsonInput
• readArray() : pappso::cbor::CborStreamReader
• readCbor() : pappso::cbor::psm::PsmFileReaderBase
• readCborArray() : pappso::cbor::CborStreamReader
• readCborMap() : pappso::cbor::CborStreamReader
• readFile() : pappso::XmlStreamReaderInterface
• readInformations() : pappso::cbor::psm::PsmFileReaderBase
• readIntensity() : pappso::TimsDataFastMap
• readJson() : pappso::cbor::psm::SageFileReader
• readLog() : pappso::cbor::psm::PsmFileReaderBase
• readMap() : pappso::cbor::psm::PsmProteinMap
• readMzDataFiles() : pappso::masschroq::JsonInput
• readParameterMap() : pappso::cbor::psm::PsmFileReaderBase
• readProjectParameters() : pappso::masschroq::JsonInput
• readProteinMap() : pappso::cbor::psm::PsmCbor2Json, pappso::cbor::psm::PsmFileReaderBase
• readPsm() : pappso::cbor::psm::PsmCbor2Json, pappso::cbor::psm::PsmFileReaderBase
• readPsmFile() : pappso::cbor::psm::PsmFileReaderBase
• readPsmProteinRef() : pappso::cbor::psm::PsmFileReaderBase
• readQuantificationMethodSp() : pappso::masschroq::JsonInput
• readRoot() : pappso::cbor::psm::PsmFileReaderBase
• readSample() : pappso::cbor::psm::PsmCbor2Json, pappso::cbor::psm::PsmFileAppend, pappso::cbor::psm::PsmFileReaderBase
• readScan() : pappso::cbor::psm::PsmCbor2Json, pappso::cbor::psm::PsmFileReaderBase, pappso::cbor::psm::PsmFileScanProcess
• readSpectrumCollection() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
• readSpectrumCollection2() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
• readSpectrumCollectionByMsLevel() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::XyMsRunReader
• readSpectrumCollectionWithMsrunReadConfig() : pappso::PwizMsRunReader
• readStream() : pappso::WrapTandemInput, pappso::WrapTandemResults, pappso::XmlStreamReaderInterface, pappso::XtandemPresetReader
• readTandemPresetFile() : pappso::TandemWrapperRun
• readTimsFrame() : pappso::TimsFrameRawDataChunck
• readTsvFile() : pappso::cbor::psm::SageReader
• readyReadStandardError() : pappso::TandemWrapperRun
• readyReadStandardOutput() : pappso::TandemWrapperRun
• realft() : pappso::FilterSavitzkyGolay
• recGenerateModel() : pappso::AaStringCodec
• reconstructTrace() : pappso::FilterLowIntensitySignalRemoval
• recordDragDirections() : pappso::BasePlotContext
• recordLine() : pappso::cbor::psm::SageTsvHandler
• recursiveDepletion() : pappso::PeptideNaturalIsotopeAverage
• redrawPlotBackground() : pappso::BasePlotWidget
• refreshBaseContext() : pappso::MassSpecTracePlotWidget
• registerJsConstructor() : pappso::BasePlotContext, pappso::DataPointJs, pappso::MassSpecTracePlotContext, pappso::MassSpectrumJs, pappso::MzIntegrationParams, pappso::QPointFJs, pappso::TraceJs
• releaseDevice() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsMsRunReaderBase, pappso::TimsMsRunReaderMs2, pappso::XyMsRunReader
• remove() : pappso::GrpMapPeptideToSubGroupSet, pappso::GrpSubGroupSet, pappso::specglob::AminoAcidModel
• removeAaModification() : pappso::Aa, pappso::Peptide
• removeAllButInternalModification() : pappso::Aa
• removeArtefactualSpike() : pappso::TimsDataFastMap
• removeBracketsForAlignedAA() : pappso::specglob::PeptideModel
• removeBucketsWithinCartIdRange() : pappso::spectree::BucketClustering
• removeCterAminoAcid() : pappso::Peptide
• removeDataSetQualMassSpectraOutsideDtOrRtRange() : pappso::MsRunDataSetTree
• removeDataSetTreeNodesOutsideDtOrRtRange() : pappso::MsRunDataSetTree
• removeFirstNonInformativeSubGroup() : pappso::GrpGroup
• removeNonInformativeSubGroups() : pappso::GrpExperiment, pappso::GrpGroup
• removeNterAminoAcid() : pappso::Peptide
• removeTraceInExclusionMargin() : pappso::FilterMzExclusion
• removeTranslationStop() : pappso::Protein
• removeUnsupportedMasses() : pappso::specpeptidoms::SpOMSSpectrum
• removeZeroValDataPoints : pappso::MzIntegrationParams
• removeZeroValDataPointsChanged() : pappso::MzIntegrationParams
• removeZeroYDataPoints() : pappso::Trace
• removingNonInformativeSubGroupsInGroup() : pappso::GrpGroupingMonitor, pappso::GrpGroupingMonitorInterface
• rend() : pappso::Peptide
• replaceAaModification() : pappso::Aa, pappso::Peptide
• replaceAaModificationOnAminoAcid() : pappso::Peptide
• replaceLeucineIsoleucine() : pappso::AaBase, pappso::Peptide
• replaceModificationsAtPosition() : pappso::PeptideVariableModificationReplacement
• replaceWildcards() : pappso::Enzyme
• replotAll() : pappso::XicWidget
• replotWithAxesRanges() : pappso::BasePlotWidget
• replotWithAxisRangeX() : pappso::BasePlotWidget
• replotWithAxisRangeY() : pappso::BasePlotWidget
• reportSimilarity() : pappso::spectree::SpecXtractInterface, pappso::spectree::SpecXtractMap
• rescale() : pappso::MassSpectrumWidget, pappso::QCPSpectrum, pappso::QCPXic, pappso::XicWidget
• rescaleOneRange() : pappso::XicWidget
• reserve() : pappso::specpeptidoms::Scenario
• reset() : pappso::DataPoint, pappso::DataPointJs, pappso::IntegrationScope, pappso::IntegrationScopeBase, pappso::IntegrationScopeRect, pappso::IntegrationScopeRhomb, pappso::MsRunReadConfig, pappso::MzIntegrationParams, pappso::specpeptidoms::Alignment, pappso::XicCoord, pappso::XicCoordTims, pappso::XtandemHyperscoreBis
• resetAxesRangeHistory() : pappso::BasePlotWidget
• resetLocationSaver() : pappso::specpeptidoms::LocationSaver
• resetPoints() : pappso::SelectionPolygon
• resetScenario() : pappso::specpeptidoms::Scenario
• resetSelectionRectangle() : pappso::BasePlotWidget
• residue : pappso::cbor::psm::SageReader::SageModification
• resolvingPowerComputationSignal() : pappso::MassSpecTracePlotWidget
• ResPrecision() : pappso::ResPrecision
• restoreAxesRangeHistory() : pappso::BasePlotWidget
• restorePreviousAxesRangeHistory() : pappso::BasePlotWidget
• result_type : ContainsAny
• retentionTime : pappso::MassSpectrumLineData, pappso::MsRunRetentionTime< T >::PeptideMs2Point, pappso::MsRunRetentionTimeSeamarkPoint< T >
• reverse() : pappso::Peptide, pappso::Protein
• reverseFindDiffMz() : pappso::specglob::ExperimentalSpectrum
• rotate() : pappso::Peptide
• roundToDecimal32bitsAsLongLongInt() : pappso::Utils
• roundToDecimals() : pappso::Utils
• rowCount() : pappso::OboListModel
• rt : pappso::cbor::psm::SageTsvHandler::Line, pappso::MsRunXicExtractor::MsRunXicExtractorPoints
• rtChanged() : pappso::XicWidget
• rtChangeEvent() : pappso::XicWidget
• rtrim() : pappso::specglob::SpectralAlignment
• rtTarget : pappso::XicCoord
• run() : pappso::TandemWrapperRun
• runFilter() : pappso::FilterSavitzkyGolay
• runTandem() : pappso::TandemWrapperRun