pappso::specpeptidoms::Alignment Struct Reference

#include <semiglobalalignment.h>

Public Member Functions
void	reset ()
	reinitialize to default score_values

Public Attributes
std::vector< std::size_t >	peaks
QString	interpretation
int	score = 0
double	begin_shift = 0.0
double	end_shift = 0.0
std::vector< double >	shifts
std::size_t	SPC = 0
std::size_t	beginning = 0
std::size_t	end = 0

Detailed Description

Definition at line 54 of file semiglobalalignment.h.

Member Function Documentation

reset()

void pappso::specpeptidoms::Alignment::reset

(

)

reinitialize to default score_values

Definition at line 44 of file semiglobalalignment.cpp.

{
  peaks.clear();
  interpretation = "";
  score          = 0;
  begin_shift    = 0.0;
  end_shift      = 0.0;
  shifts.clear();
  SPC       = 0;
  beginning = 0;
  end       = 0;
}

References begin_shift, beginning, end, end_shift, interpretation, peaks, score, shifts, and SPC.

Member Data Documentation

begin_shift

double pappso::specpeptidoms::Alignment::begin_shift = 0.0

Definition at line 63 of file semiglobalalignment.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::getPotentialMassErrors(), and reset().

beginning

std::size_t pappso::specpeptidoms::Alignment::beginning = 0

Definition at line 69 of file semiglobalalignment.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::getPotentialMassErrors(), and reset().

end

std::size_t pappso::specpeptidoms::Alignment::end = 0

Definition at line 70 of file semiglobalalignment.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::getPotentialMassErrors(), and reset().

end_shift

double pappso::specpeptidoms::Alignment::end_shift = 0.0

Definition at line 65 of file semiglobalalignment.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::getPotentialMassErrors(), and reset().

interpretation

QString pappso::specpeptidoms::Alignment::interpretation

Definition at line 61 of file semiglobalalignment.h.

Referenced by reset().

peaks

std::vector<std::size_t> pappso::specpeptidoms::Alignment::peaks

Definition at line 60 of file semiglobalalignment.h.

Referenced by reset().

score

int pappso::specpeptidoms::Alignment::score = 0

Definition at line 62 of file semiglobalalignment.h.

Referenced by reset().

shifts

std::vector<double> pappso::specpeptidoms::Alignment::shifts

Definition at line 67 of file semiglobalalignment.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::getPotentialMassErrors(), and reset().

SPC

std::size_t pappso::specpeptidoms::Alignment::SPC = 0

Definition at line 68 of file semiglobalalignment.h.

Referenced by reset().

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The documentation for this struct was generated from the following files:

• pappsomspp/core/processing/specpeptidoms/semiglobalalignment.h
• pappsomspp/core/processing/specpeptidoms/semiglobalalignment.cpp