#include <scorevalues.h>

Public Member Functions
	ScoreValues ()

	ScoreValues (const ScoreValues &other)

virtual	~ScoreValues ()

const ScoreValues &	operator= (const ScoreValues &other)

int	get (ScoreValueType type)

void	set (ScoreValueType type, int value)

Private Attributes
int	m_scoreTable [10]

Detailed Description

Todo: write docs

Definition at line 53 of file scorevalues.h.

Constructor & Destructor Documentation

◆ ScoreValues() [1/2]

pappso::specglob::ScoreValues::ScoreValues ( )

Default constructor

Definition at line 46 of file scorevalues.cpp.

{
 
  // #Scores to apply
  // #Score for non alignment (int)
  //  sg.scoreNonAlign=-4
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreNonAlign] = -4;
 
  // #Score for re-alignment  (int)
  //  sg.scoreReAlignNative=-8
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreReAlignNative] = -8;
  // sg.scoreReAlignSym=-8
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreReAlignSym] = -8;
  // sg.scoreReAlignBoth=-6
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreReAlignBoth] = -6;
 
  // #Score for good alignment(int)
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreAlignNative] = 7;
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreAlignSym]    = 7;
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreAlignBoth]   = 10;
 
 
  // #Score for re - alignment without offset(int)
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreReAlignNativeNO] = 4;
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreReAlignSymNO]    = 4;
  m_scoreTable[(std::uint8_t)ScoreValueType::scoreReAlignBothNO]   = 7;
}

References m_scoreTable, pappso::specglob::scoreAlignBoth, pappso::specglob::scoreAlignNative, pappso::specglob::scoreAlignSym, pappso::specglob::scoreNonAlign, pappso::specglob::scoreReAlignBoth, pappso::specglob::scoreReAlignBothNO, pappso::specglob::scoreReAlignNative, pappso::specglob::scoreReAlignNativeNO, pappso::specglob::scoreReAlignSym, and pappso::specglob::scoreReAlignSymNO.

Referenced by ScoreValues(), and operator=().

◆ ScoreValues() [2/2]

pappso::specglob::ScoreValues::ScoreValues ( const ScoreValues & other )

Definition at line 74 of file scorevalues.cpp.

{
  std::copy(other.m_scoreTable, other.m_scoreTable + 10, m_scoreTable);
}

References ScoreValues(), and m_scoreTable.

◆ ~ScoreValues()

pappso::specglob::ScoreValues::~ScoreValues ( )

virtual

Destructor

Definition at line 79 of file scorevalues.cpp.

80{

81}

Member Function Documentation

◆ get()

int pappso::specglob::ScoreValues::get ( ScoreValueType type )

Definition at line 84 of file scorevalues.cpp.

{
  return m_scoreTable[(std::uint8_t)type];
}

References m_scoreTable.

◆ operator=()

const ScoreValues & pappso::specglob::ScoreValues::operator= ( const ScoreValues & other )

Definition at line 96 of file scorevalues.cpp.

{
  std::copy(other.m_scoreTable, other.m_scoreTable + 10, m_scoreTable);
  return *this;
}

References ScoreValues(), and m_scoreTable.

◆ set()

void pappso::specglob::ScoreValues::set	(	ScoreValueType	type,
		int	value )

Definition at line 90 of file scorevalues.cpp.

{
  m_scoreTable[(std::uint8_t)type] = value;
}

References m_scoreTable.

Member Data Documentation

◆ m_scoreTable

int pappso::specglob::ScoreValues::m_scoreTable[10]

private

Definition at line 76 of file scorevalues.h.

Referenced by ScoreValues(), ScoreValues(), get(), operator=(), and set().

The documentation for this class was generated from the following files:

pappsomspp/core/processing/specglob/scorevalues.h
pappsomspp/core/processing/specglob/scorevalues.cpp

Public Member Functions

Private Attributes