Todo List

Member cubic_solver (InHousePolynomialSolverResult &res, double a1, double b, double c, double d)

Cardaono cubic solver

Namespace pappso

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Class pappso::cbor::CborStreamReader

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Class pappso::cbor::CborStreamReaderInterface

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Class pappso::cbor::CborStreamWriter

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Class pappso::cbor::JsonStreamWriter

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Class pappso::cbor::psm::CborScanMapBase

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Class pappso::cbor::psm::PsmCbor2Json

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Class pappso::cbor::psm::PsmFeatures

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Class pappso::cbor::psm::PsmFeaturesScan

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Class pappso::cbor::psm::PsmFileAppend

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Class pappso::cbor::psm::PsmFileReaderBase

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Class pappso::cbor::psm::PsmNewEval

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Class pappso::cbor::psm::PsmProteinMap

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Class pappso::cbor::psm::PsmSpecGlob

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Class pappso::cbor::psm::PsmSpecGlobScan

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Class pappso::cbor::psm::PsmSpecPeptidOms

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Class pappso::cbor::psm::SageFileReader

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Class pappso::cbor::psm::SageReader

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Class pappso::cbor::psm::SageTsvHandler

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Class pappso::CosineSimilarity

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Class pappso::FilterSuiteString

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Class pappso::FilterTriangle

sum peaks under a triangle base

Class pappso::IonMobilityGrid

helper to align ion mobility ranges between MS runs

Class pappso::masschroq::AlignmentMethod

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Class pappso::masschroq::CborOutputStream

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Class pappso::masschroq::JsonInput

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Class pappso::masschroq::MbrPeptideMeasurements

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Class pappso::masschroq::MsRunGroup

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Class pappso::masschroq::PeptideBase

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Class pappso::masschroq::PeptideLabel

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Class pappso::masschroq::PeptideMeasurementsBase

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Class pappso::masschroq::PeptideObservation

group together one Peptide and observations on this peptide

Class pappso::masschroq::PrecursorParser

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Class pappso::masschroq::Protein

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Class pappso::masschroq::QuantificationMethod

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Class pappso::masschroq::Utils

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Class pappso::MgfOutput

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Class pappso::MzCalibrationInterface

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Member pappso::MzCalibrationInterface::operator== (const MzCalibrationInterface &other) const

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Class pappso::MzCalibrationModel1

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Class pappso::MzCalibrationStore

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Member pappso::MzCalibrationStore::MzCalibrationStore ()

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Member pappso::MzCalibrationStore::~MzCalibrationStore ()

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Class pappso::MzIdentMlWriter

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Class pappso::MzxmlOutput

use msrunreader as input and writes all peaks into an mzXML output stream

Class pappso::OboListModel

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Class pappso::OboListProxyModel

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Member pappso::Peptide::setGlobalModification (Enums::Isotope isotope_kind)

Class pappso::PeptideProFormaParser

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Class pappso::ProjectParameters

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Class pappso::PsmFeatures

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Class pappso::specglob::ExperimentalSpectrum

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Class pappso::specglob::PeptideModel

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Class pappso::specglob::PeptideSpectrum

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Class pappso::specglob::PostTreatment

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Class pappso::specglob::ScoreValues

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Class pappso::specglob::SpectralAlignment

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Class pappso::specself::SelfSpectrum

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Class pappso::spectree::SpecTree

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Class pappso::TimsBinDec

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Class pappso::TimsData

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Class pappso::TimsDdaPrecursors

TimsData helper that stores all related DDA informations

Member pappso::TimsDdaPrecursors::getClosestPrecursorIdByMz (std::vector< std::vector< double > > ids, double mz_value)

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Class pappso::TimsDiaSlices

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Class pappso::TimsDirectXicExtractor

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Class pappso::TimsFrame

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Class pappso::TimsFrameBase

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Class pappso::TimsFrameMobilityTraces

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Class pappso::TimsFrameRawDataChunck

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Member pappso::TimsFramesMsRunReader::TimsFramesMsRunReader (MsRunIdCstSPtr &msrun_id_csp)

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Class pappso::TimsFrameType1

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Class pappso::TimsMs2CentroidFilter

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Class pappso::TimsMsFileReader

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Member pappso::TimsMsRunReader::TimsMsRunReader (MsRunIdCstSPtr &msrun_id_csp)

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Member pappso::TimsMsRunReaderMs2::TimsMsRunReaderMs2 (MsRunIdCstSPtr &msrun_id_csp)

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Member pappso::TimsMsRunReaderMs2Selected::TimsMsRunReaderMs2Selected (MsRunIdCstSPtr &msrun_id_csp)

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Class pappso::TimsXicExtractorInterface

set of minimum functions to build XICs using Tims data

Class pappso::TracePeakList

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Class pappso::UiMonitorInterface

pure virtual user interface class to monitor any long process it contains :

• title, status, progress messages
• callback functions to interrupt long process it does not contains any error messages functions : use pappso::ExceptionInterrupted to handle this

Class pappso::UiMonitorText

simple text monitor using text stream

Class pappso::UiMonitorTextPercent

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Class pappso::UiMonitorVoid

nothing monitor to save CPU and memory if needed

Class pappso::WrapTandemInput

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Class pappso::WrapTandemResults

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