pappso::Xic Class Reference

#include <xic.h>

Inheritance diagram for pappso::Xic:

Public Member Functions
	Xic ()
	Xic (const Trace &other)
virtual	~Xic ()
XicCstSPtr	makeXicCstSPtr () const
XicSPtr	makeXicSPtr () const
unsigned int	getMsPointDistance (pappso_double rt, pappso_double rt_other) const
	get the number of MS measurement between 2 retention times on this xic
void	debugPrintValues () const
void	sortByRetentionTime ()
	sort peaks by retention time
const DataPoint &	atRetentionTime (pappso_double rt) const
	get the DataPoint at the given retention time
virtual Trace &	operator= (const Trace &x)
virtual Trace &	operator= (Trace &&x)
Public Member Functions inherited from pappso::Trace
	Trace ()
	Trace (const QString &text)
	Trace (const std::vector< pappso_double > &xVector, const std::vector< pappso_double > &yVector)
	Trace (const std::vector< std::pair< pappso_double, pappso_double > > &dataPoints)
	Trace (const std::vector< DataPoint > &dataPoints)
	Trace (const std::vector< DataPoint > &&dataPoints)
	Trace (const MapTrace &map_trace)
	Trace (const Trace &other)
	Trace (const Trace &&other)
virtual	~Trace ()
size_t	initialize (const std::vector< pappso_double > &xVector, const std::vector< pappso_double > &yVector)
size_t	initialize (const QString &x_text, const QString &y_text)
size_t	initialize (const QString &space_sep_text)
size_t	initialize (const Trace &other)
size_t	initialize (const std::map< pappso_double, pappso_double > &map)
TraceSPtr	makeTraceSPtr () const
TraceCstSPtr	makeTraceCstSPtr () const
size_t	append (const DataPoint &data_point)
	appends a datapoint and return new size
std::vector< pappso_double >	xValues () const
std::vector< pappso_double >	yValues () const
std::map< pappso_double, pappso_double >	toMap () const
DataPoint	containsX (pappso_double value, PrecisionPtr precision_p=nullptr) const
const DataPoint &	minXDataPoint () const
const DataPoint &	maxXDataPoint () const
const DataPoint &	minYDataPoint () const
const DataPoint &	maxYDataPoint () const
pappso_double	minX () const
pappso_double	maxX () const
pappso_double	minY () const
pappso_double	maxY () const
pappso_double	maxY (double mzStart, double mzEnd) const
pappso_double	sumY () const
pappso_double	sumY (double mzStart, double mzEnd) const
void	sort (Enums::SortType sort_type, Enums::SortOrder sort_order=Enums::SortOrder::ascending)
void	sortX (Enums::SortOrder sort_order=Enums::SortOrder::ascending)
void	sortY (Enums::SortOrder sort_order=Enums::SortOrder::ascending)
void	unique ()
std::size_t	removeZeroYDataPoints ()
virtual Trace &	filter (const FilterInterface &filter) final
	apply a filter on this trace
QString	toString () const
QByteArray	xAsBase64Encoded () const
QByteArray	yAsBase64Encoded () const
std::vector< DataPoint >::const_iterator	dataPointCstIteratorWithX (pappso_double value) const
	find datapoint with exactly x value

Additional Inherited Members
Protected Member Functions inherited from pappso::Trace
std::size_t	dataPointIndexWithX (pappso_double value) const
std::vector< DataPoint >::iterator	dataPointIteratorWithX (pappso_double value)

Detailed Description

Definition at line 43 of file xic.h.

Constructor & Destructor Documentation

Xic() [1/2]

pappso::Xic::Xic

(

)

Definition at line 37 of file xic.cpp.

{
  qDebug() << "Xic::Xic begin";
  qDebug() << "Xic::Xic end";
}

Xic() [2/2]

pappso::Xic::Xic

(

const Trace &

other

)

Definition at line 43 of file xic.cpp.

                           : Trace(other)
{
}

References pappso::Trace::Trace().

~Xic()

pappso::Xic::~Xic ( )

virtual

Definition at line 47 of file xic.cpp.

{
}

Member Function Documentation

atRetentionTime()

const DataPoint & pappso::Xic::atRetentionTime

(

pappso_double

rt

)

const

get the DataPoint at the given retention time

Definition at line 74 of file xic.cpp.

{
  for(auto &&peak : *this)
    {
      if(peak.y == rt)
        return peak;
    }
  throw ExceptionOutOfRange(
    QObject::tr("no intensity for this retention time"));
}

debugPrintValues()

void pappso::Xic::debugPrintValues

(

)

const

Definition at line 65 of file xic.cpp.

{
  for(auto &&peak : *this)
    {
      qDebug() << "rt = " << peak.x << ", int = " << peak.y;
    }
}

getMsPointDistance()

unsigned int pappso::Xic::getMsPointDistance	(	pappso_double	rt,
		pappso_double	rt_other ) const

get the number of MS measurement between 2 retention times on this xic

Definition at line 86 of file xic.cpp.

{
  if(rt_first > rt_second)
    {
      std::swap(rt_first, rt_second);
    }
  unsigned int distance = 0;
  auto it               = this->begin();
  auto itend            = this->end();
 
  while((it->x < rt_first) && (it != itend))
    {
      it++;
    }
  while((rt_second > it->x) && (it != itend))
    {
      qDebug() << "Xic::getMsPointDistance " << rt_first << " it->rt " << it->x
               << " rt_second " << rt_second << distance;
      distance++;
      it++;
    }
 
 
  return distance;
}

makeXicCstSPtr()

XicCstSPtr pappso::Xic::makeXicCstSPtr

(

)

const

Definition at line 53 of file xic.cpp.

{
  return std::make_shared<const Xic>(*this);
}

makeXicSPtr()

XicSPtr pappso::Xic::makeXicSPtr

(

)

const

Definition at line 59 of file xic.cpp.

{
  return std::make_shared<Xic>(*this);
}

operator=() [1/2]

Trace & pappso::Trace::operator= ( const Trace & x )

virtual

Reimplemented from pappso::Trace.

Definition at line 179 of file trace.cpp.

{
  assign(other.begin(), other.end());
 
  return *this;
}

operator=() [2/2]

Trace & pappso::Trace::operator= ( Trace && x )

virtual

Reimplemented from pappso::Trace.

Definition at line 180 of file trace.cpp.

{
  vector<DataPoint>::operator=(std::move(other));
  return *this;
}

sortByRetentionTime()

void pappso::Xic::sortByRetentionTime

(

)

sort peaks by retention time

Definition at line 113 of file xic.cpp.

{
  sortX();
}

References pappso::Trace::sortX().

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The documentation for this class was generated from the following files:

• pappsomspp/core/xic/xic.h
• pappsomspp/core/xic/xic.cpp