pappso::TraceDetectionMoulon Class Reference

#include <tracedetectionmoulon.h>

Inheritance diagram for pappso::TraceDetectionMoulon:

Public Member Functions
	TraceDetectionMoulon (unsigned int smoothing_half_window_length, pappso_double tic_start, pappso_double tic_stop)
	TraceDetectionMoulon (const TraceDetectionMoulon &other)
virtual	~TraceDetectionMoulon ()
void	setFilterMorphoMean (const FilterMorphoMean &smooth)
void	setTicStart (double tic_start)
void	setTicStop (double tic_stop)
unsigned int	getSmoothingHalfEdgeWindows () const
pappso_double	getTicStart () const
pappso_double	getTicStop () const
void	detect (const Trace &xic, TraceDetectionSinkInterface &sink, bool remove_peak_base) const override
	detect peaks on a trace

Private Attributes
FilterMorphoMean	m_xicFilterSmoothing
pappso_double	m_ticStart
pappso_double	m_ticStop

Detailed Description

Definition at line 34 of file tracedetectionmoulon.h.

Constructor & Destructor Documentation

TraceDetectionMoulon() [1/2]

pappso::TraceDetectionMoulon::TraceDetectionMoulon	(	unsigned int	smoothing_half_window_length,
		pappso_double	tic_start,
		pappso_double	tic_stop )

Definition at line 28 of file tracedetectionmoulon.cpp.

  : m_xicFilterSmoothing(smoothing_half_window_length)
{
  m_ticStart = tic_start;
  m_ticStop  = tic_stop;
}

References m_ticStart, m_ticStop, and m_xicFilterSmoothing.

Referenced by TraceDetectionMoulon().

TraceDetectionMoulon() [2/2]

pappso::TraceDetectionMoulon::TraceDetectionMoulon

(

const TraceDetectionMoulon &

other

)

Definition at line 37 of file tracedetectionmoulon.cpp.

  : m_xicFilterSmoothing(other.m_xicFilterSmoothing)
{
  m_ticStart = other.m_ticStart;
  m_ticStop  = other.m_ticStop;
}

References TraceDetectionMoulon(), m_ticStart, m_ticStop, and m_xicFilterSmoothing.

~TraceDetectionMoulon()

pappso::TraceDetectionMoulon::~TraceDetectionMoulon ( )

virtual

Definition at line 44 of file tracedetectionmoulon.cpp.

{
}

Member Function Documentation

detect()

void pappso::TraceDetectionMoulon::detect ( const Trace & trace, TraceDetectionSinkInterface & sink, bool remove_peak_base ) const

overridevirtual

detect peaks on a trace

Parameters

trace	the trace to detect peaks on
sink	the object to store peaks or stream it
remove_peak_base	if true, removes the area under the base of the peak

Implements pappso::TraceDetectionInterface.

Definition at line 85 of file tracedetectionmoulon.cpp.

{
 
  Trace xic_smoothed(xic);
 
  m_xicFilterSmoothing.filter(xic_smoothed);
 
  // detect peaks :
  bool banked(false);
  unsigned int nb_tic_start(0);
 
  std::vector<DataPoint>::const_iterator it_smoothed;
  std::vector<DataPoint>::const_iterator it, it_begin;
 
  // TracePeak *p_current_peak = nullptr;
 
  for(it_smoothed = xic_smoothed.begin(), it = xic.begin(); it_smoothed != xic_smoothed.end();
      ++it_smoothed, ++it)
    {
 
      if((nb_tic_start == 0) && (it_begin != xic.end()) && (banked == false))
        {
          // delete(p_current_peak);
          // p_current_peak = nullptr;
          it_begin = xic.end();
        }
 
      if(it_smoothed->y >= m_ticStart)
        {
          nb_tic_start++;
          if(it_begin == xic.end())
            {
              // p_current_peak = new TracePeak;
              // p_current_peak->setLeftBoundary(*it_smoothed);
              it_begin = it;
              banked   = false;
            }
          if((nb_tic_start == 2) && (banked == false))
            {
              banked = true;
            }
        }
      else
        {
          nb_tic_start = 0;
        }
      if(it_smoothed->y <= m_ticStop)
        {
          if(it_begin != xic.end())
            {
 
              if(banked)
                {
                  TracePeak peak(it_begin, it + 1, remove_peak_base);
                  sink.setTracePeak(peak);
                }
              banked = false;
            }
        }
    }
}

References m_ticStart, m_ticStop, m_xicFilterSmoothing, and pappso::TraceDetectionSinkInterface::setTracePeak().

getSmoothingHalfEdgeWindows()

unsigned int pappso::TraceDetectionMoulon::getSmoothingHalfEdgeWindows

(

)

const

Definition at line 67 of file tracedetectionmoulon.cpp.

{
  return m_xicFilterSmoothing.getHalfWindowSize();
}

References m_xicFilterSmoothing.

getTicStart()

pappso_double pappso::TraceDetectionMoulon::getTicStart

(

)

const

Definition at line 73 of file tracedetectionmoulon.cpp.

{
  return m_ticStart;
}

References m_ticStart.

getTicStop()

pappso_double pappso::TraceDetectionMoulon::getTicStop

(

)

const

Definition at line 79 of file tracedetectionmoulon.cpp.

{
  return m_ticStop;
}

References m_ticStop.

setFilterMorphoMean()

void pappso::TraceDetectionMoulon::setFilterMorphoMean

(

const FilterMorphoMean &

smooth

)

Definition at line 50 of file tracedetectionmoulon.cpp.

{
  m_xicFilterSmoothing = smooth;
}

References m_xicFilterSmoothing.

setTicStart()

void pappso::TraceDetectionMoulon::setTicStart

(

double

tic_start

)

Definition at line 56 of file tracedetectionmoulon.cpp.

{
  m_ticStart = tic_start;
}

References m_ticStart.

setTicStop()

void pappso::TraceDetectionMoulon::setTicStop

(

double

tic_stop

)

Definition at line 61 of file tracedetectionmoulon.cpp.

{
  m_ticStop = tic_stop;
}

References m_ticStop.

Member Data Documentation

m_ticStart

pappso_double pappso::TraceDetectionMoulon::m_ticStart

private

Definition at line 59 of file tracedetectionmoulon.h.

Referenced by TraceDetectionMoulon(), TraceDetectionMoulon(), detect(), getTicStart(), and setTicStart().

m_ticStop

pappso_double pappso::TraceDetectionMoulon::m_ticStop

private

Definition at line 60 of file tracedetectionmoulon.h.

Referenced by TraceDetectionMoulon(), TraceDetectionMoulon(), detect(), getTicStop(), and setTicStop().

m_xicFilterSmoothing

FilterMorphoMean pappso::TraceDetectionMoulon::m_xicFilterSmoothing

private

Definition at line 58 of file tracedetectionmoulon.h.

Referenced by TraceDetectionMoulon(), TraceDetectionMoulon(), detect(), getSmoothingHalfEdgeWindows(), and setFilterMorphoMean().

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The documentation for this class was generated from the following files:

• pappsomspp/core/processing/detection/tracedetectionmoulon.h
• pappsomspp/core/processing/detection/tracedetectionmoulon.cpp