pappso::TimsDiaSlices::MsMsWindow Struct Reference

#include <timsdiaslices.h>

Public Member Functions
bool	isMzInRange (double mz) const
	tell if given mz is in range for this window

Public Attributes
std::size_t	SliceIndex = 0
std::size_t	WindowGroup
std::size_t	ScanNumBegin
std::size_t	ScanNumEnd
double	IsolationMz
double	IsolationWidth
double	CollisionEnergy

Detailed Description

Definition at line 50 of file timsdiaslices.h.

Member Function Documentation

isMzInRange()

bool pappso::TimsDiaSlices::MsMsWindow::isMzInRange

(

double

mz

)

const

tell if given mz is in range for this window

Definition at line 37 of file timsdiaslices.cpp.

{
  double half_window = IsolationWidth / 2;
  if(mz < (IsolationMz - half_window))
    return false;
  if(mz > (IsolationMz + half_window))
    return false;
  return true;
}

References IsolationMz, and IsolationWidth.

Member Data Documentation

CollisionEnergy

double pappso::TimsDiaSlices::MsMsWindow::CollisionEnergy

Definition at line 62 of file timsdiaslices.h.

Referenced by pappso::TimsDiaSlices::getMs2QualifiedSpectrumByGlobalSliceIndex().

IsolationMz

double pappso::TimsDiaSlices::MsMsWindow::IsolationMz

Definition at line 60 of file timsdiaslices.h.

Referenced by pappso::TimsDiaSlices::getMs1QualifiedSpectrumByGlobalSliceIndex(), pappso::TimsDiaSlices::getMs2QualifiedSpectrumByGlobalSliceIndex(), and isMzInRange().

IsolationWidth

double pappso::TimsDiaSlices::MsMsWindow::IsolationWidth

Definition at line 61 of file timsdiaslices.h.

Referenced by pappso::TimsDiaSlices::getMs1QualifiedSpectrumByGlobalSliceIndex(), pappso::TimsDiaSlices::getMs2QualifiedSpectrumByGlobalSliceIndex(), and isMzInRange().

ScanNumBegin

std::size_t pappso::TimsDiaSlices::MsMsWindow::ScanNumBegin

Definition at line 58 of file timsdiaslices.h.

Referenced by pappso::TimsDiaSlices::getCombinedMs2ScansByGlobalSliceIndex(), pappso::TimsDiaSlices::getMs1QualifiedSpectrumByGlobalSliceIndex(), and pappso::TimsDiaSlices::getMs2QualifiedSpectrumByGlobalSliceIndex().

ScanNumEnd

std::size_t pappso::TimsDiaSlices::MsMsWindow::ScanNumEnd

Definition at line 59 of file timsdiaslices.h.

Referenced by pappso::TimsDiaSlices::getCombinedMs2ScansByGlobalSliceIndex(), pappso::TimsDiaSlices::getMs1QualifiedSpectrumByGlobalSliceIndex(), and pappso::TimsDiaSlices::getMs2QualifiedSpectrumByGlobalSliceIndex().

SliceIndex

std::size_t pappso::TimsDiaSlices::MsMsWindow::SliceIndex = 0

Definition at line 56 of file timsdiaslices.h.

Referenced by pappso::TimsDiaSlices::MsMsWindowGroupList::addInGroup(), pappso::TimsDiaSlices::getMs1QualifiedSpectrumByGlobalSliceIndex(), and pappso::TimsDiaSlices::getMs2QualifiedSpectrumByGlobalSliceIndex().

WindowGroup

std::size_t pappso::TimsDiaSlices::MsMsWindow::WindowGroup

Definition at line 57 of file timsdiaslices.h.

Referenced by pappso::TimsDiaSlices::MsMsWindowGroupList::addInGroup(), pappso::TimsDiaSlices::getMs1QualifiedSpectrumByGlobalSliceIndex(), and pappso::TimsDiaSlices::getMs2QualifiedSpectrumByGlobalSliceIndex().

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The documentation for this struct was generated from the following files:

• pappsomspp/core/vendors/tims/timsdiaslices.h
• pappsomspp/core/vendors/tims/timsdiaslices.cpp