pappso::specpeptidoms::CorrectionTree Class Reference

#include <correctiontree.h>

Public Member Functions
	CorrectionTree ()
	~CorrectionTree ()
void	addPeaks (std::size_t peak1, std::size_t peak2)
std::vector< std::vector< std::size_t > >	getPeaks () const

Private Member Functions
	CorrectionTree (std::size_t peak)

Private Attributes
std::size_t	peak
CorrectionTreeSp	msp_left
CorrectionTreeSp	msp_right

Detailed Description

Definition at line 44 of file correctiontree.h.

Constructor & Destructor Documentation

CorrectionTree() [1/2]

pappso::specpeptidoms::CorrectionTree::CorrectionTree

(

)

Definition at line 36 of file correctiontree.cpp.

                                                  : peak(0)
{
}

References peak.

Referenced by addPeaks().

~CorrectionTree()

pappso::specpeptidoms::CorrectionTree::~CorrectionTree

(

)

Definition at line 44 of file correctiontree.cpp.

{
}

CorrectionTree() [2/2]

pappso::specpeptidoms::CorrectionTree::CorrectionTree ( std::size_t peak )

private

Definition at line 40 of file correctiontree.cpp.

                                                                : peak(peak)
{
}

References peak.

Member Function Documentation

addPeaks()

void pappso::specpeptidoms::CorrectionTree::addPeaks	(	std::size_t	peak1,
		std::size_t	peak2 )

Definition at line 49 of file correctiontree.cpp.

{
  if(msp_left != nullptr)
    {
      msp_left->addPeaks(peak1, peak2);
      msp_right->addPeaks(peak1, peak2);
    }
  else
    {
      msp_left  = std::make_shared<CorrectionTree>(CorrectionTree(peak1));
      msp_right = std::make_shared<CorrectionTree>(CorrectionTree(peak2));
    }
}

References CorrectionTree(), msp_left, and msp_right.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::correctAlign(), and pappso::specpeptidoms::SemiGlobalAlignment::preciseAlign().

getPeaks()

std::vector< std::vector< std::size_t > > pappso::specpeptidoms::CorrectionTree::getPeaks

(

)

const

Definition at line 64 of file correctiontree.cpp.

{
  std::vector<std::vector<std::size_t>> v_left, v_right;
  if(peak == 0 && msp_left != nullptr)
    {
      v_left  = msp_left->getPeaks();
      v_right = msp_right->getPeaks();
      v_left.insert(v_left.end(), v_right.begin(), v_right.end());
    }
  else if(peak > 0 && msp_left != nullptr)
    {
      v_left  = msp_left->getPeaks();
      v_right = msp_right->getPeaks();
      v_left.insert(v_left.end(), v_right.begin(), v_right.end());
      for(auto vec = v_left.begin(); vec != v_left.end(); vec++)
        {
          vec->push_back(peak);
        }
    }
  else if(peak > 0)
    {
      v_left.push_back({peak});
    }
  return v_left;
}

References msp_left, msp_right, and peak.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::correctAlign(), and pappso::specpeptidoms::SemiGlobalAlignment::preciseAlign().

Member Data Documentation

msp_left

CorrectionTreeSp pappso::specpeptidoms::CorrectionTree::msp_left

private

Definition at line 56 of file correctiontree.h.

Referenced by addPeaks(), and getPeaks().

msp_right

CorrectionTreeSp pappso::specpeptidoms::CorrectionTree::msp_right

private

Definition at line 56 of file correctiontree.h.

Referenced by addPeaks(), and getPeaks().

peak

std::size_t pappso::specpeptidoms::CorrectionTree::peak

private

Definition at line 55 of file correctiontree.h.

Referenced by CorrectionTree(), CorrectionTree(), and getPeaks().

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The documentation for this class was generated from the following files:

• pappsomspp/core/processing/specpeptidoms/correctiontree.h
• pappsomspp/core/processing/specpeptidoms/correctiontree.cpp