pappso::cbor::psm::PsmCborUtils Class Reference

utilities to help managing data in PSM CBOR data file More...

#include <psmcborutils.h>

Static Public Member Functions
static void	prepareCborScanWithSpectrum (QCborMap &cbor_scan, const pappso::QualifiedMassSpectrum &ms2_qualified_mass_spectrum)

Detailed Description

utilities to help managing data in PSM CBOR data file

Definition at line 43 of file psmcborutils.h.

Member Function Documentation

prepareCborScanWithSpectrum()

void pappso::cbor::psm::PsmCborUtils::prepareCborScanWithSpectrum ( QCborMap & cbor_scan, const pappso::QualifiedMassSpectrum & ms2_qualified_mass_spectrum )

static

Definition at line 37 of file psmcborutils.cpp.

{
  // id
  QCborMap cbor_scan_id;
  cbor_scan_id.insert(QString("index"),
                      (qint64)ms2_qualified_mass_spectrum.getMassSpectrumId().getSpectrumIndex());
  cbor_scan_id.insert(QString("native_id"),
                      ms2_qualified_mass_spectrum.getMassSpectrumId().getNativeId());
  cbor_scan.insert(QString("id"), cbor_scan_id.toCborValue());
 
 
  // precursor
  QCborMap cbor_scan_precursor;
  cbor_scan_id.insert(QString("z"), ms2_qualified_mass_spectrum.getPrecursorCharge());
  cbor_scan_id.insert(QString("mz"), ms2_qualified_mass_spectrum.getPrecursorMz());
  cbor_scan_id.insert(QString("mh"), ms2_qualified_mass_spectrum.getPrecursorMass());
  cbor_scan_id.insert(QString("intensity"), ms2_qualified_mass_spectrum.getPrecursorIntensity());
  cbor_scan.insert(QString("precursor"), cbor_scan_precursor.toCborValue());
 
 
  // ms2
  QCborMap cbor_scan_ms2;
  cbor_scan_ms2.insert(QString("rt"), ms2_qualified_mass_spectrum.getRtInSeconds());
  cbor_scan.insert(QString("ms2"), cbor_scan_ms2.toCborValue());
}

References pappso::QualifiedMassSpectrum::getMassSpectrumId(), pappso::MassSpectrumId::getNativeId(), pappso::QualifiedMassSpectrum::getPrecursorCharge(), pappso::QualifiedMassSpectrum::getPrecursorIntensity(), pappso::QualifiedMassSpectrum::getPrecursorMass(), pappso::QualifiedMassSpectrum::getPrecursorMz(), pappso::QualifiedMassSpectrum::getRtInSeconds(), and pappso::MassSpectrumId::getSpectrumIndex().

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The documentation for this class was generated from the following files:

• pappsomspp/core/processing/cbor/psm/psmcborutils.h
• pappsomspp/core/processing/cbor/psm/psmcborutils.cpp