pappso::XicPeptideFragmentIonNaturalIsotope Class Reference

#include <xicpeptidefragmentionnaturalisotope.h>

Inheritance diagram for pappso::XicPeptideFragmentIonNaturalIsotope:

Public Member Functions
	XicPeptideFragmentIonNaturalIsotope (const MsRunId &msrun_id, const PeptideNaturalIsotopeAverageSp &naturalIsotopeAverageSp, const PeptideFragmentIonSp &peptideFragmentIonSp)
	XicPeptideFragmentIonNaturalIsotope (const XicPeptideFragmentIonNaturalIsotope &other)
unsigned int	getCharge () const
const PeptideNaturalIsotopeAverageSp &	getPeptideNaturalIsotopeAverageSp () const
const PeptideFragmentIonSp &	getPeptideFragmentIonSp () const
	~XicPeptideFragmentIonNaturalIsotope ()
Public Member Functions inherited from pappso::QualifiedXic
	QualifiedXic (const MsRunId &msrun_id, pappso_double mz, PrecisionPtr precision)
virtual	~QualifiedXic ()
	QualifiedXic (const QualifiedXic &toCopy)
pappso_double	getMz () const
const XicCstSPtr	getXicCstSPtr () const
const XicSPtr &	getXicSPtr () const

Private Attributes
PeptideNaturalIsotopeAverageSp	msp_naturalIsotopeAverage
PeptideFragmentIonSp	msp_peptideFragmentIon

Detailed Description

Definition at line 35 of file xicpeptidefragmentionnaturalisotope.h.

Constructor & Destructor Documentation

XicPeptideFragmentIonNaturalIsotope() [1/2]

pappso::XicPeptideFragmentIonNaturalIsotope::XicPeptideFragmentIonNaturalIsotope	(	const MsRunId &	msrun_id,
		const PeptideNaturalIsotopeAverageSp &	naturalIsotopeAverageSp,
		const PeptideFragmentIonSp &	peptideFragmentIonSp )

Definition at line 29 of file xicpeptidefragmentionnaturalisotope.cpp.

  : QualifiedXic(msrun_id,
                 naturalIsotopeAverageSp.get()->getMz(),
                 naturalIsotopeAverageSp.get()->getPrecision()),
    msp_naturalIsotopeAverage(naturalIsotopeAverageSp),
    msp_peptideFragmentIon(peptideFragmentIonSp)
{
  qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
              "XicPeptideFragmentIonNaturalIsotope begin";
 
  qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
              "XicPeptideFragmentIonNaturalIsotope 1 "
           << msp_naturalIsotopeAverage.get();
 
  qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
              "XicPeptideFragmentIonNaturalIsotope 2 "
           << msp_peptideFragmentIon.get();
}

References pappso::QualifiedXic::QualifiedXic(), pappso::QualifiedXic::getMz(), msp_naturalIsotopeAverage, and msp_peptideFragmentIon.

Referenced by XicPeptideFragmentIonNaturalIsotope().

XicPeptideFragmentIonNaturalIsotope() [2/2]

pappso::XicPeptideFragmentIonNaturalIsotope::XicPeptideFragmentIonNaturalIsotope

(

const XicPeptideFragmentIonNaturalIsotope &

other

)

Definition at line 55 of file xicpeptidefragmentionnaturalisotope.cpp.

  : QualifiedXic(other)
{
  qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
              "XicPeptideFragmentIonNaturalIsotope copy begin";
  msp_naturalIsotopeAverage = other.msp_naturalIsotopeAverage;
  msp_peptideFragmentIon    = other.msp_peptideFragmentIon;
  qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
              "XicPeptideFragmentIonNaturalIsotope copy end";
}

References pappso::QualifiedXic::QualifiedXic(), XicPeptideFragmentIonNaturalIsotope(), msp_naturalIsotopeAverage, and msp_peptideFragmentIon.

~XicPeptideFragmentIonNaturalIsotope()

pappso::XicPeptideFragmentIonNaturalIsotope::~XicPeptideFragmentIonNaturalIsotope

(

)

Definition at line 51 of file xicpeptidefragmentionnaturalisotope.cpp.

{
}

Member Function Documentation

getCharge()

unsigned int pappso::XicPeptideFragmentIonNaturalIsotope::getCharge ( ) const

inline

Definition at line 51 of file xicpeptidefragmentionnaturalisotope.h.

  {
    return msp_naturalIsotopeAverage.get()->getCharge();
  };

References msp_naturalIsotopeAverage.

getPeptideFragmentIonSp()

const PeptideFragmentIonSp & pappso::XicPeptideFragmentIonNaturalIsotope::getPeptideFragmentIonSp ( ) const

inline

Definition at line 63 of file xicpeptidefragmentionnaturalisotope.h.

  {
    return msp_peptideFragmentIon;
  };

References msp_peptideFragmentIon.

getPeptideNaturalIsotopeAverageSp()

const PeptideNaturalIsotopeAverageSp & pappso::XicPeptideFragmentIonNaturalIsotope::getPeptideNaturalIsotopeAverageSp ( ) const

inline

Definition at line 57 of file xicpeptidefragmentionnaturalisotope.h.

  {
    return msp_naturalIsotopeAverage;
  };

References msp_naturalIsotopeAverage.

Member Data Documentation

msp_naturalIsotopeAverage

PeptideNaturalIsotopeAverageSp pappso::XicPeptideFragmentIonNaturalIsotope::msp_naturalIsotopeAverage

private

Definition at line 38 of file xicpeptidefragmentionnaturalisotope.h.

Referenced by XicPeptideFragmentIonNaturalIsotope(), XicPeptideFragmentIonNaturalIsotope(), getCharge(), and getPeptideNaturalIsotopeAverageSp().

msp_peptideFragmentIon

PeptideFragmentIonSp pappso::XicPeptideFragmentIonNaturalIsotope::msp_peptideFragmentIon

private

Definition at line 39 of file xicpeptidefragmentionnaturalisotope.h.

Referenced by XicPeptideFragmentIonNaturalIsotope(), XicPeptideFragmentIonNaturalIsotope(), and getPeptideFragmentIonSp().

---

The documentation for this class was generated from the following files:

• pappsomspp/core/xic/xicpeptidefragmentionnaturalisotope.h
• pappsomspp/core/xic/xicpeptidefragmentionnaturalisotope.cpp