pappso::Peptide Member List

This is the complete list of members for pappso::Peptide, including all inherited members.

addAaModification(AaModificationP aaModification, unsigned int position)	pappso::Peptide
addAaModificationOnAllAminoAcid(AaModificationP aaModification, Enums::AminoAcidChar amino_acid)	pappso::Peptide
begin()	pappso::Peptide
begin() const	pappso::Peptide
countModificationOnAa(AaModificationP mod, const std::vector< char > &aa_list) const	pappso::Peptide
end()	pappso::Peptide
end() const	pappso::Peptide
getAa(unsigned int position)	pappso::Peptide
getAaPositionList(char aa) const	pappso::Peptide
getAaPositionList(std::list< char > list_aa) const	pappso::Peptide
getChemicalFormula() const override	pappso::Peptide	virtual
getChemicalFormulaCharge(unsigned int charge) const override	pappso::Peptide	virtual
getCleavageCterModification() const	pappso::Peptide
getCleavageNterModification() const	pappso::Peptide
getConstAa(unsigned int position) const	pappso::Peptide
getCterModification() const	pappso::Peptide
getFormula(unsigned int charge) const final	pappso::PeptideInterface	virtual
getLiAbsoluteString() const	pappso::Peptide
getMass()	pappso::Peptide
getMass() const override	pappso::Peptide	virtual
getModificationPositionList(AaModificationP mod) const	pappso::Peptide
getModificationPositionList(AaModificationP mod, const std::vector< char > &aa_list) const	pappso::Peptide
getMz(unsigned int charge) const final	pappso::Ion	virtual
getName() const	pappso::PeptideInterface	inlinevirtual
getNterModification() const	pappso::Peptide
getNumberOfAtom(Enums::AtomIsotopeSurvey atom) const override	pappso::Peptide	virtual
getNumberOfIsotope(Enums::Isotope isotope) const override	pappso::Peptide	virtual
getNumberOfModification(AaModificationP mod) const	pappso::Peptide
getSequence() const override	pappso::Peptide	virtual
getSequenceLi() const	pappso::PeptideInterface	virtual
Ion()	pappso::Ion
isPalindrome() const override	pappso::Peptide	virtual
m_aaVec	pappso::Peptide	protected
m_cleavageCterMod	pappso::Peptide	protected
m_cleavageNterMod	pappso::Peptide	protected
m_CterMod	pappso::Peptide	protected
m_fullC13	pappso::Peptide	protected
m_fullH2	pappso::Peptide	protected
m_fullN15	pappso::Peptide	protected
m_NterMod	pappso::Peptide	protected
m_proxyMass	pappso::Peptide	protected
makeNoConstPeptideSp() const	pappso::Peptide
makePeptideSp() const	pappso::Peptide
matchPeak(PrecisionPtr precision, pappso_double peak_mz, unsigned int charge) const final	pappso::PeptideInterface	inlinevirtual
operator<(const Peptide &l, const Peptide &r)	pappso::Peptide	friend
operator==(const Peptide &l, const Peptide &r)	pappso::Peptide	friend
Peptide(const QString &pepstr)	pappso::Peptide
Peptide(const Peptide &peptide)	pappso::Peptide
Peptide(Peptide &&toCopy)	pappso::Peptide
PeptideProFormaParser class	pappso::Peptide	friend
rbegin() const	pappso::Peptide
removeAaModification(AaModificationP mod)	pappso::Peptide
removeCterAminoAcid()	pappso::Peptide
removeNterAminoAcid()	pappso::Peptide
rend() const	pappso::Peptide
replaceAaModification(AaModificationP oldmod, AaModificationP newmod)	pappso::Peptide
replaceAaModificationOnAminoAcid(Enums::AminoAcidChar aa, pappso::AaModificationP oldmod, pappso::AaModificationP newmod)	pappso::Peptide
replaceLeucineIsoleucine()	pappso::Peptide
reverse()	pappso::Peptide
rotate()	pappso::Peptide
setCleavageCterModification(AaModificationP mod)	pappso::Peptide
setCleavageNterModification(AaModificationP mod)	pappso::Peptide
setCterModification(AaModificationP mod)	pappso::Peptide
setGlobalModification(Enums::Isotope isotope_kind)	pappso::Peptide
setNterModification(AaModificationP mod)	pappso::Peptide
size() const override	pappso::Peptide	virtual
toAbsoluteString() const	pappso::Peptide
toProForma() const	pappso::Peptide
toString() const	pappso::Peptide
~Ion()	pappso::Ion
~Peptide()	pappso::Peptide	virtual