pappso::OboPsiMs Class Reference

#include <obopsims.h>

Public Member Functions
	OboPsiMs (OboPsiModHandlerInterface &handler)
virtual	~OboPsiMs ()

Private Member Functions
void	parse ()
	starts reading obo file and reports each term with the callback function

Private Attributes
OboPsiModTerm	m_term
OboPsiModHandlerInterface &	m_handler

Detailed Description

Definition at line 38 of file obopsims.h.

Constructor & Destructor Documentation

OboPsiMs()

pappso::OboPsiMs::OboPsiMs

(

pappso::OboPsiModHandlerInterface &

handler

)

Definition at line 43 of file obopsims.cpp.

                                                                 : m_handler(handler)
{
 
  qDebug();
  initMyResource();
  parse();
}

References initMyResource(), m_handler, and parse().

~OboPsiMs()

pappso::OboPsiMs::~OboPsiMs ( )

virtual

Definition at line 51 of file obopsims.cpp.

{
}

Member Function Documentation

parse()

void pappso::OboPsiMs::parse ( )

private

starts reading obo file and reports each term with the callback function

Definition at line 57 of file obopsims.cpp.

{
  // std::cout << "OboPsiMod::parse Begin parsing OBO file" << std::endl;
  qDebug();
  QFile obofile(":/obo/resources/obo/psi-ms.obo");
  if(!obofile.exists())
    {
      throw PappsoException(
        QObject::tr("PSI-MS OBO resource file : %1 not found").arg(obofile.fileName()));
    }
  obofile.open(QIODevice::ReadOnly);
  QTextStream p_in(&obofile);
 
  // Search accession conta
  // QTextStream in(p_in);
  QString line = p_in.readLine();
  bool in_term = false;
  while(!p_in.atEnd())
    {
      // qDebug() << "OboPsiMod::parse line "<< line;
      if(line.startsWith("[Term]"))
        {
          in_term = true;
          m_term.clearTerm();
        }
      else if(line.isEmpty())
        {
          if(in_term)
            {
              m_handler.setOboPsiModTerm(m_term);
              in_term = false;
            }
        }
      else
        {
          if(in_term)
            m_term.parseLine(line);
          // m_handler.setSequence(line);
        }
      line = p_in.readLine();
    }
  if(in_term)
    {
      m_handler.setOboPsiModTerm(m_term);
    }
  // p_in->close();
 
  obofile.close();
}

References line, m_handler, and m_term.

Referenced by OboPsiMs().

Member Data Documentation

m_handler

OboPsiModHandlerInterface& pappso::OboPsiMs::m_handler

private

Definition at line 46 of file obopsims.h.

Referenced by OboPsiMs(), and parse().

m_term

OboPsiModTerm pappso::OboPsiMs::m_term

private

Definition at line 45 of file obopsims.h.

Referenced by parse().

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The documentation for this class was generated from the following files:

• pappsomspp/core/obo/obopsims.h
• pappsomspp/core/obo/obopsims.cpp