pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints Class Reference

class to read retention time points of MsRun More...

#include <msrunxicextractor.h>

Inheritance diagram for pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints:

Public Member Functions
	MsRunXicExtractorReadPoints (std::vector< MsRunXicExtractorPoints > &msrun_points)
virtual void	setQualifiedMassSpectrum (const QualifiedMassSpectrum &spectrum) override
virtual bool	needPeakList () const override
	tells if we need the peak list (if we want the binary data) for each spectrum
virtual void	loadingEnded () override
Public Member Functions inherited from pappso::SpectrumCollectionHandlerInterface
virtual bool	needMsLevelPeakList (unsigned int ms_level) const final
	tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level
virtual void	setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final
	tells if we need the peak list given
virtual bool	shouldStop ()
virtual void	spectrumListHasSize (std::size_t size)
virtual void	setReadAhead (bool is_read_ahead) final
	use threads to read a spectrum by batch of batch_size
virtual bool	isReadAhead () const
	tells if we want to read ahead spectrum

Private Attributes
std::vector< MsRunXicExtractorPoints > &	m_msrun_points

Detailed Description

class to read retention time points of MsRun

Definition at line 73 of file msrunxicextractor.h.

Constructor & Destructor Documentation

MsRunXicExtractorReadPoints()

pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints::MsRunXicExtractorReadPoints ( std::vector< MsRunXicExtractorPoints > & msrun_points )

inline

Definition at line 79 of file msrunxicextractor.h.

      : m_msrun_points(msrun_points){};

References m_msrun_points.

Member Function Documentation

loadingEnded()

virtual void pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints::loadingEnded ( )

inlineoverridevirtual

Reimplemented from pappso::SpectrumCollectionHandlerInterface.

Definition at line 99 of file msrunxicextractor.h.

    {
    }

needPeakList()

virtual bool pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints::needPeakList ( ) const

inlineoverridevirtual

tells if we need the peak list (if we want the binary data) for each spectrum

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 94 of file msrunxicextractor.h.

    {
      return false;
    }

setQualifiedMassSpectrum()

virtual void pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints::setQualifiedMassSpectrum ( const QualifiedMassSpectrum & spectrum )

inlineoverridevirtual

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 84 of file msrunxicextractor.h.

    {
      if(spectrum.getMsLevel() == 1)
        {
          m_msrun_points.push_back(
            {spectrum.getMassSpectrumId().getSpectrumIndex(),
             spectrum.getRtInSeconds()});
        }
    }

References pappso::QualifiedMassSpectrum::getMassSpectrumId(), pappso::QualifiedMassSpectrum::getMsLevel(), pappso::QualifiedMassSpectrum::getRtInSeconds(), pappso::MassSpectrumId::getSpectrumIndex(), and m_msrun_points.

Member Data Documentation

m_msrun_points

std::vector<MsRunXicExtractorPoints>& pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints::m_msrun_points

private

Definition at line 76 of file msrunxicextractor.h.

Referenced by MsRunXicExtractorReadPoints(), and setQualifiedMassSpectrum().

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The documentation for this class was generated from the following file:

• pappsomspp/core/xicextractor/private/msrunxicextractor.h