pappso::MsRunSlice Class Reference

#include <msrunslice.h>

Public Member Functions
	MsRunSlice ()
	MsRunSlice (const MsRunSlice &other)
virtual	~MsRunSlice ()
MsRunSliceSPtr	makeMsRunSliceSp () const
void	setSliceNumber (unsigned int slice_number)
unsigned int	getSliceNumber () const
void	clear ()
std::size_t	size () const
void	setSize (std::size_t size)
	set number of spectrum (mz/intensity) stored in this slice
void	appendToStream (QDataStream &stream, std::size_t ipos) const
const MassSpectrum &	getSpectrum (std::size_t i) const
MassSpectrum &	getSpectrum (std::size_t i)
void	setSpectrum (std::size_t i, const MassSpectrum &spectrum)
	set the mass spectrum for a given index (retention time)

Private Attributes
unsigned int	m_sliceNumber = 0
std::vector< MassSpectrum >	m_spectrumList

Detailed Description

Definition at line 42 of file msrunslice.h.

Constructor & Destructor Documentation

MsRunSlice() [1/2]

pappso::MsRunSlice::MsRunSlice

(

)

Definition at line 42 of file msrunslice.cpp.

{
  m_sliceNumber = 0;
}

References m_sliceNumber.

Referenced by MsRunSlice().

MsRunSlice() [2/2]

pappso::MsRunSlice::MsRunSlice

(

const MsRunSlice &

other

)

Definition at line 47 of file msrunslice.cpp.

{
  m_sliceNumber  = other.m_sliceNumber;
  m_spectrumList = other.m_spectrumList;
}

References MsRunSlice(), m_sliceNumber, and m_spectrumList.

~MsRunSlice()

pappso::MsRunSlice::~MsRunSlice ( )

virtual

Definition at line 52 of file msrunslice.cpp.

{
}

Member Function Documentation

appendToStream()

void pappso::MsRunSlice::appendToStream	(	QDataStream &	stream,
		std::size_t	ipos ) const

Definition at line 146 of file msrunslice.cpp.

{
 
  for(auto &&spectrum : m_spectrumList)
    {
      outstream << (quint32)ipos;
      outstream << spectrum;
      ipos++;
    }
}

References m_spectrumList.

clear()

void pappso::MsRunSlice::clear

(

)

Definition at line 86 of file msrunslice.cpp.

{
  m_spectrumList.clear();
  m_sliceNumber = 0;
}

References m_sliceNumber, and m_spectrumList.

getSliceNumber()

unsigned int pappso::MsRunSlice::getSliceNumber

(

)

const

Definition at line 69 of file msrunslice.cpp.

{
  return m_sliceNumber;
}

References m_sliceNumber.

getSpectrum() [1/2]

MassSpectrum & pappso::MsRunSlice::getSpectrum

(

std::size_t

i

)

Definition at line 111 of file msrunslice.cpp.

{
  try
    {
      return m_spectrumList.at(i);
    }
  catch(std::exception &error)
    {
      qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
      throw pappso::ExceptionOutOfRange(
        QObject::tr("unable to get spectrum %1 (size=%2) %3")
          .arg(i)
          .arg(m_spectrumList.size())
          .arg(error.what()));
    }
}

References m_spectrumList.

getSpectrum() [2/2]

const MassSpectrum & pappso::MsRunSlice::getSpectrum

(

std::size_t

i

)

const

Definition at line 128 of file msrunslice.cpp.

{
  try
    {
      return m_spectrumList.at(i);
    }
  catch(std::exception &error)
    {
      qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
      throw pappso::ExceptionOutOfRange(
        QObject::tr("unable to get spectrum %1 (size=%2) %3")
          .arg(i)
          .arg(m_spectrumList.size())
          .arg(error.what()));
    }
}

References m_spectrumList.

makeMsRunSliceSp()

MsRunSliceSPtr pappso::MsRunSlice::makeMsRunSliceSp

(

)

const

Definition at line 57 of file msrunslice.cpp.

{
  return std::make_shared<const MsRunSlice>(*this);
}

setSize()

void pappso::MsRunSlice::setSize

(

std::size_t

size

)

set number of spectrum (mz/intensity) stored in this slice

Definition at line 81 of file msrunslice.cpp.

{
  m_spectrumList.resize(size);
}

References m_spectrumList, and size().

Referenced by pappso::operator>>().

setSliceNumber()

void pappso::MsRunSlice::setSliceNumber

(

unsigned int

slice_number

)

Definition at line 63 of file msrunslice.cpp.

{
  m_sliceNumber = slice_number;
}

References m_sliceNumber.

Referenced by pappso::operator>>().

setSpectrum()

void pappso::MsRunSlice::setSpectrum	(	std::size_t	i,
		const MassSpectrum &	spectrum )

set the mass spectrum for a given index (retention time)

Definition at line 93 of file msrunslice.cpp.

{
  try
    {
      m_spectrumList[i] = spectrum;
    }
  catch(std::exception &error)
    {
      qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
      throw pappso::ExceptionOutOfRange(
        QObject::tr("unable to access spectrum %1 (size=%2) %3")
          .arg(i)
          .arg(m_spectrumList.size())
          .arg(error.what()));
    }
}

References m_spectrumList.

Referenced by pappso::operator>>().

size()

std::size_t pappso::MsRunSlice::size

(

)

const

Definition at line 75 of file msrunslice.cpp.

{
  return m_spectrumList.size();
}

References m_spectrumList.

Referenced by pappso::operator>>(), and setSize().

Member Data Documentation

m_sliceNumber

unsigned int pappso::MsRunSlice::m_sliceNumber = 0

private

Definition at line 73 of file msrunslice.h.

Referenced by MsRunSlice(), MsRunSlice(), clear(), getSliceNumber(), and setSliceNumber().

m_spectrumList

std::vector<MassSpectrum> pappso::MsRunSlice::m_spectrumList

private

Definition at line 74 of file msrunslice.h.

Referenced by MsRunSlice(), appendToStream(), clear(), getSpectrum(), getSpectrum(), setSize(), setSpectrum(), and size().

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The documentation for this class was generated from the following files:

• pappsomspp/core/xicextractor/private/msrunslice.h
• pappsomspp/core/xicextractor/private/msrunslice.cpp