collect retention times along MS run More...

#include <spectrumcollectionhandlerinterface.h>

Inheritance diagram for pappso::MsRunReaderRetentionTimeLine:

Public Member Functions
	MsRunReaderRetentionTimeLine ()

virtual	~MsRunReaderRetentionTimeLine ()

virtual void	setQualifiedMassSpectrum (const QualifiedMassSpectrum &spectrum) override

virtual bool	needPeakList () const override
	tells if we need the peak list (if we want the binary data) for each spectrum

const std::vector< double > &	getRetentionTimeLine () const

Public Member Functions inherited from pappso::SpectrumCollectionHandlerInterface
virtual bool	needMsLevelPeakList (unsigned int ms_level) const final
	tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level

virtual void	setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final
	tells if we need the peak list given

virtual bool	shouldStop ()

virtual void	loadingEnded ()

virtual void	spectrumListHasSize (std::size_t size)

virtual void	setReadAhead (bool is_read_ahead) final
	use threads to read a spectrum by batch of batch_size

virtual bool	isReadAhead () const
	tells if we want to read ahead spectrum

Private Attributes
std::vector< double >	m_retention_time_list

Detailed Description

collect retention times along MS run

Definition at line 149 of file spectrumcollectionhandlerinterface.h.

Constructor & Destructor Documentation

◆ MsRunReaderRetentionTimeLine()

pappso::MsRunReaderRetentionTimeLine::MsRunReaderRetentionTimeLine ( )

Definition at line 217 of file spectrumcollectionhandlerinterface.cpp.

{
  // qDebug();
}

◆ ~MsRunReaderRetentionTimeLine()

pappso::MsRunReaderRetentionTimeLine::~MsRunReaderRetentionTimeLine ( )

virtual

Definition at line 223 of file spectrumcollectionhandlerinterface.cpp.

{
  // qDebug();
}

Member Function Documentation

◆ getRetentionTimeLine()

const std::vector< double > & pappso::MsRunReaderRetentionTimeLine::getRetentionTimeLine ( ) const

Definition at line 246 of file spectrumcollectionhandlerinterface.cpp.

{
  return m_retention_time_list;
}

References m_retention_time_list.

Referenced by pappso::MsRunReader::getRetentionTimeLine().

◆ needPeakList()

bool pappso::MsRunReaderRetentionTimeLine::needPeakList ( ) const

overridevirtual

tells if we need the peak list (if we want the binary data) for each spectrum

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 230 of file spectrumcollectionhandlerinterface.cpp.

{
  return false;
}

◆ setQualifiedMassSpectrum()

void pappso::MsRunReaderRetentionTimeLine::setQualifiedMassSpectrum ( const QualifiedMassSpectrum & spectrum )

overridevirtual

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 237 of file spectrumcollectionhandlerinterface.cpp.

{
  qDebug() << " " << qspectrum.getMassSpectrumId().getNativeId();
 
  m_retention_time_list.push_back(qspectrum.getRtInSeconds());
}

References pappso::QualifiedMassSpectrum::getMassSpectrumId(), pappso::MassSpectrumId::getNativeId(), pappso::QualifiedMassSpectrum::getRtInSeconds(), and m_retention_time_list.

Member Data Documentation

◆ m_retention_time_list

std::vector<double> pappso::MsRunReaderRetentionTimeLine::m_retention_time_list

private

Definition at line 153 of file spectrumcollectionhandlerinterface.h.

Referenced by getRetentionTimeLine(), and setQualifiedMassSpectrum().

The documentation for this class was generated from the following files:

pappsomspp/core/msrun/spectrumcollectionhandlerinterface.h
pappsomspp/core/msrun/spectrumcollectionhandlerinterface.cpp

Public Member Functions

Private Attributes