pappso::MsRunQualifiedSpectrumLoader Class Reference

Load all qualified spectrum into a vector. More...

#include <spectrumcollectionhandlerinterface.h>

Inheritance diagram for pappso::MsRunQualifiedSpectrumLoader:

Public Member Functions
	MsRunQualifiedSpectrumLoader ()
virtual	~MsRunQualifiedSpectrumLoader ()
virtual void	setQualifiedMassSpectrum (const QualifiedMassSpectrum &qualified_mass_spectrum) override
virtual bool	needPeakList () const override
	tells if we need the peak list (if we want the binary data) for each spectrum
virtual void	spectrumListHasSize (std::size_t size) override
const std::vector< QualifiedMassSpectrum > &	getQualifiedMassSpectrumList () const
void	clear ()
Public Member Functions inherited from pappso::SpectrumCollectionHandlerInterface
virtual bool	needMsLevelPeakList (unsigned int ms_level) const final
	tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level
virtual void	setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final
	tells if we need the peak list given
virtual bool	shouldStop ()
virtual void	loadingEnded ()
virtual void	setReadAhead (bool is_read_ahead) final
	use threads to read a spectrum by batch of batch_size
virtual bool	isReadAhead () const
	tells if we want to read ahead spectrum

Private Attributes
std::vector< QualifiedMassSpectrum >	m_qualifiedSpectrumList

Detailed Description

Load all qualified spectrum into a vector.

Definition at line 185 of file spectrumcollectionhandlerinterface.h.

Constructor & Destructor Documentation

MsRunQualifiedSpectrumLoader()

pappso::MsRunQualifiedSpectrumLoader::MsRunQualifiedSpectrumLoader

(

)

Definition at line 310 of file spectrumcollectionhandlerinterface.cpp.

{
}

~MsRunQualifiedSpectrumLoader()

pappso::MsRunQualifiedSpectrumLoader::~MsRunQualifiedSpectrumLoader ( )

virtual

Definition at line 315 of file spectrumcollectionhandlerinterface.cpp.

{
}

Member Function Documentation

clear()

void pappso::MsRunQualifiedSpectrumLoader::clear

(

)

Definition at line 348 of file spectrumcollectionhandlerinterface.cpp.

{
  m_qualifiedSpectrumList.clear();
}

References m_qualifiedSpectrumList.

getQualifiedMassSpectrumList()

const std::vector< QualifiedMassSpectrum > & pappso::MsRunQualifiedSpectrumLoader::getQualifiedMassSpectrumList

(

)

const

Definition at line 342 of file spectrumcollectionhandlerinterface.cpp.

{
  return m_qualifiedSpectrumList;
}

References m_qualifiedSpectrumList.

needPeakList()

bool pappso::MsRunQualifiedSpectrumLoader::needPeakList ( ) const

overridevirtual

tells if we need the peak list (if we want the binary data) for each spectrum

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 321 of file spectrumcollectionhandlerinterface.cpp.

{
  return true;
}

setQualifiedMassSpectrum()

void pappso::MsRunQualifiedSpectrumLoader::setQualifiedMassSpectrum ( const QualifiedMassSpectrum & qualified_mass_spectrum )

overridevirtual

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 334 of file spectrumcollectionhandlerinterface.cpp.

{
  qDebug() << qualified_mass_spectrum.getMassSpectrumId().getNativeId();
  m_qualifiedSpectrumList.push_back(qualified_mass_spectrum);
}

References pappso::QualifiedMassSpectrum::getMassSpectrumId(), pappso::MassSpectrumId::getNativeId(), and m_qualifiedSpectrumList.

spectrumListHasSize()

void pappso::MsRunQualifiedSpectrumLoader::spectrumListHasSize ( std::size_t size )

overridevirtual

Reimplemented from pappso::SpectrumCollectionHandlerInterface.

Definition at line 327 of file spectrumcollectionhandlerinterface.cpp.

{
  m_qualifiedSpectrumList.clear();
}

References m_qualifiedSpectrumList.

Member Data Documentation

m_qualifiedSpectrumList

std::vector<QualifiedMassSpectrum> pappso::MsRunQualifiedSpectrumLoader::m_qualifiedSpectrumList

private

Definition at line 202 of file spectrumcollectionhandlerinterface.h.

Referenced by clear(), getQualifiedMassSpectrumList(), setQualifiedMassSpectrum(), and spectrumListHasSize().

---

The documentation for this class was generated from the following files:

• pappsomspp/core/msrun/spectrumcollectionhandlerinterface.h
• pappsomspp/core/msrun/spectrumcollectionhandlerinterface.cpp