#include <msfilereader.h>

Inheritance diagram for pappso::MsFileReader:

Public Member Functions
	MsFileReader (const QString &file_name)

virtual	~MsFileReader ()

virtual Enums::MsDataFormat	getFileFormat ()=0

virtual std::vector< MsRunIdCstSPtr >	getMsRunIds (const QString &run_prefix)=0

Protected Attributes
QString	m_fileName

Enums::MsDataFormat	m_fileFormat = Enums::MsDataFormat::unknown

Detailed Description

Definition at line 13 of file msfilereader.h.

Constructor & Destructor Documentation

◆ MsFileReader()

pappso::MsFileReader::MsFileReader ( const QString & file_name )

Definition at line 19 of file msfilereader.cpp.

                                                   : m_fileName{file_name}
{
  QFile file(file_name);
  if(!file.exists())
    throw(ExceptionNotFound(QObject::tr("File %1 not found.")
                              .arg(QFileInfo(file_name).absoluteFilePath())));
}

References m_fileName.

Referenced by pappso::BafAsciiFileReader::BafAsciiFileReader(), pappso::PwizMsFileReader::PwizMsFileReader(), pappso::TimsMsFileReader::TimsMsFileReader(), and pappso::XyMsFileReader::XyMsFileReader().

◆ ~MsFileReader()

pappso::MsFileReader::~MsFileReader ( )

virtual

Definition at line 28 of file msfilereader.cpp.

29{

30}

Member Function Documentation

◆ getFileFormat()

virtual Enums::MsDataFormat pappso::MsFileReader::getFileFormat ( )

pure virtual

Implemented in pappso::BafAsciiFileReader, pappso::PwizMsFileReader, pappso::TimsMsFileReader, and pappso::XyMsFileReader.

◆ getMsRunIds()

virtual std::vector< MsRunIdCstSPtr > pappso::MsFileReader::getMsRunIds ( const QString & run_prefix )

pure virtual

Implemented in pappso::BafAsciiFileReader, pappso::PwizMsFileReader, pappso::TimsMsFileReader, and pappso::XyMsFileReader.

Member Data Documentation

◆ m_fileFormat

Enums::MsDataFormat pappso::MsFileReader::m_fileFormat = Enums::MsDataFormat::unknown

protected

Definition at line 17 of file msfilereader.h.

Referenced by pappso::BafAsciiFileReader::getFileFormat(), pappso::PwizMsFileReader::getFileFormat(), pappso::TimsMsFileReader::getFileFormat(), pappso::XyMsFileReader::getFileFormat(), pappso::BafAsciiFileReader::getMsRunIds(), pappso::PwizMsFileReader::getMsRunIds(), pappso::TimsMsFileReader::getMsRunIds(), pappso::XyMsFileReader::getMsRunIds(), pappso::BafAsciiFileReader::initialize(), pappso::PwizMsFileReader::initialize(), pappso::TimsMsFileReader::initialize(), and pappso::XyMsFileReader::initialize().

◆ m_fileName

QString pappso::MsFileReader::m_fileName

protected

Definition at line 16 of file msfilereader.h.

Referenced by MsFileReader(), pappso::TimsMsFileReader::TimsMsFileReader(), pappso::BafAsciiFileReader::getMsRunIds(), pappso::PwizMsFileReader::getMsRunIds(), pappso::TimsMsFileReader::getMsRunIds(), pappso::XyMsFileReader::getMsRunIds(), pappso::BafAsciiFileReader::initialize(), pappso::PwizMsFileReader::initialize(), pappso::TimsMsFileReader::initialize(), and pappso::XyMsFileReader::initialize().

The documentation for this class was generated from the following files:

pappsomspp/core/msfile/msfilereader.h
pappsomspp/core/msfile/msfilereader.cpp

Public Member Functions

Protected Attributes