pappso::GrpPeptide Class Reference

#include <grppeptide.h>

Public Member Functions
	~GrpPeptide ()
const QString &	getSequence () const
bool	operator< (const GrpPeptide &other) const
	sort grp peptides between each other sorts by peptide LI sequence and mass
void	setRank (unsigned int i)
void	setGroupNumber (unsigned int i)
const QString	getGroupingId () const
unsigned int	getGroupNumber () const
unsigned int	getRank () const

Protected Member Functions
	GrpPeptide (QString sequence, pappso_double mass)

Private Attributes
unsigned int	m_groupNumber = 0
unsigned int	m_rank = 0
const QString	m_sequence
const pappso_double	m_mass

Friends
class	GrpExperiment

Detailed Description

Definition at line 42 of file grppeptide.h.

Constructor & Destructor Documentation

GrpPeptide()

GrpPeptide::GrpPeptide ( QString sequence, pappso_double mass )

protected

Definition at line 30 of file grppeptide.cpp.

  : m_sequence(sequence.replace("L", "I")), m_mass(mass)
{
}

References m_mass, and m_sequence.

Referenced by operator<().

~GrpPeptide()

GrpPeptide::~GrpPeptide

(

)

Definition at line 35 of file grppeptide.cpp.

{
}

Member Function Documentation

getGroupingId()

const QString GrpPeptide::getGroupingId

(

)

const

Definition at line 79 of file grppeptide.cpp.

{
  return QString("pep%1%2")
    .arg(Utils::getLexicalOrderedString(m_groupNumber))
    .arg(Utils::getLexicalOrderedString(m_rank));
}

References pappso::Utils::getLexicalOrderedString(), m_groupNumber, and m_rank.

getGroupNumber()

unsigned int GrpPeptide::getGroupNumber

(

)

const

Definition at line 64 of file grppeptide.cpp.

{
  return m_groupNumber;
}

References m_groupNumber.

getRank()

unsigned int GrpPeptide::getRank

(

)

const

Definition at line 69 of file grppeptide.cpp.

{
  return m_rank;
}

References m_rank.

getSequence()

const QString & GrpPeptide::getSequence

(

)

const

Definition at line 74 of file grppeptide.cpp.

{
  return m_sequence;
}

References m_sequence.

operator<()

bool GrpPeptide::operator<

(

const GrpPeptide &

other

)

const

sort grp peptides between each other sorts by peptide LI sequence and mass

Definition at line 39 of file grppeptide.cpp.

{
  if(m_sequence == other.m_sequence)
    {
      return (m_mass < other.m_mass);
    }
  else
    {
      return (m_sequence < other.m_sequence);
    }
}

References GrpPeptide(), m_mass, and m_sequence.

setGroupNumber()

void GrpPeptide::setGroupNumber

(

unsigned int

i

)

Definition at line 58 of file grppeptide.cpp.

{
  m_groupNumber = i;
}

References m_groupNumber.

setRank()

void GrpPeptide::setRank

(

unsigned int

i

)

Definition at line 53 of file grppeptide.cpp.

{
  m_rank = i;
}

References m_rank.

Friends And Related Symbol Documentation

GrpExperiment

friend class GrpExperiment

friend

Definition at line 44 of file grppeptide.h.

References GrpExperiment.

Referenced by GrpExperiment.

Member Data Documentation

m_groupNumber

unsigned int pappso::GrpPeptide::m_groupNumber = 0

private

Definition at line 47 of file grppeptide.h.

Referenced by getGroupingId(), getGroupNumber(), and setGroupNumber().

m_mass

const pappso_double pappso::GrpPeptide::m_mass

private

Definition at line 51 of file grppeptide.h.

Referenced by GrpPeptide(), and operator<().

m_rank

unsigned int pappso::GrpPeptide::m_rank = 0

private

Definition at line 48 of file grppeptide.h.

Referenced by getGroupingId(), getRank(), and setRank().

m_sequence

const QString pappso::GrpPeptide::m_sequence

private

Definition at line 50 of file grppeptide.h.

Referenced by GrpPeptide(), getSequence(), operator<(), and pappso::GrpExperiment::setGrpPeptide().

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The documentation for this class was generated from the following files:

• pappsomspp/core/grouping/grppeptide.h
• pappsomspp/core/grouping/grppeptide.cpp