pappso::DeepProtEnumStr Class Reference

#include <deepprotenum.h>

Static Public Member Functions
static const QString	toString (DeepProtMatchType match_type)
static const QString	toString (DeepProtPeptideCandidateStatus status)
static DeepProtPeptideCandidateStatus	DeepProtPeptideCandidateStatusFromString (const QString &name)
static DeepProtMatchType	DeepProtMatchTypeFromString (const QString &name)

Detailed Description

Definition at line 72 of file deepprotenum.h.

Member Function Documentation

DeepProtMatchTypeFromString()

pappso::DeepProtMatchType pappso::DeepProtEnumStr::DeepProtMatchTypeFromString ( const QString & name )

static

Definition at line 38 of file deepprotenum.cpp.

{
  DeepProtMatchType match_type = DeepProtMatchType::uncategorized;
  if(name == "delta_position")
    {
      match_type = DeepProtMatchType::DeltaPosition;
    }
  else if(name == "no_delta_position")
    {
      match_type = DeepProtMatchType::NoDeltaPosition;
    }
  else if(name == "uncategorized")
    {
      match_type = DeepProtMatchType::uncategorized;
    }
  else if(name == "zero_mass_delta")
    {
      match_type = DeepProtMatchType::ZeroMassDelta;
    }
  else if(name == "zero_mass_delta_mc")
    {
      match_type = DeepProtMatchType::ZeroMassDeltaMissedCleavage;
    }
  else if(name == "zero_mass_delta_st")
    {
      match_type = DeepProtMatchType::ZeroMassDeltaSemiTryptic;
    }
  else
    {
      throw pappso::PappsoException(
        QObject::tr("DeepProtMatchType unknown :\n%1").arg(name));
    }
  return match_type;
}

References pappso::DeltaPosition, pappso::NoDeltaPosition, pappso::uncategorized, pappso::ZeroMassDelta, pappso::ZeroMassDeltaMissedCleavage, and pappso::ZeroMassDeltaSemiTryptic.

DeepProtPeptideCandidateStatusFromString()

pappso::DeepProtPeptideCandidateStatus pappso::DeepProtEnumStr::DeepProtPeptideCandidateStatusFromString ( const QString & name )

static

Definition at line 75 of file deepprotenum.cpp.

{
 
  DeepProtPeptideCandidateStatus status =
    DeepProtPeptideCandidateStatus::unmodified;
  if(name == "cter_removal")
    {
      status = DeepProtPeptideCandidateStatus::CterRemoval;
    }
  else if(name == "delta_position")
    {
      status = DeepProtPeptideCandidateStatus::DeltaPosition;
    }
  else if(name == "missed_cleavage")
    {
      status = DeepProtPeptideCandidateStatus::MissedCleavage;
    }
  else if(name == "no_delta_position")
    {
      status = DeepProtPeptideCandidateStatus::NoDeltaPosition;
    }
  else if(name == "nter_removal")
    {
      status = DeepProtPeptideCandidateStatus::NterRemoval;
    }
  else if(name == "zero_mass_delta")
    {
      status = DeepProtPeptideCandidateStatus::ZeroMassDelta;
    }
 
  else
    {
      throw pappso::PappsoException(
        QObject::tr("DeepProtPeptideCandidateStatus unknown :\n%1").arg(name));
    }
  return status;
}

References pappso::CterRemoval, pappso::DeltaPosition, pappso::MissedCleavage, pappso::NoDeltaPosition, pappso::NterRemoval, pappso::unmodified, and pappso::ZeroMassDelta.

toString() [1/2]

const QString pappso::DeepProtEnumStr::toString ( pappso::DeepProtMatchType match_type )

static

Definition at line 115 of file deepprotenum.cpp.

{
 
  QString match_type_str;
  switch(match_type)
    {
      case DeepProtMatchType::DeltaPosition:
        match_type_str = "delta_position";
        break;
      case DeepProtMatchType::NoDeltaPosition:
        match_type_str = "no_delta_position";
        break;
      case DeepProtMatchType::uncategorized:
        match_type_str = "uncategorized";
        break;
      case DeepProtMatchType::ZeroMassDelta:
        match_type_str = "zero_mass_delta";
        break;
      case DeepProtMatchType::ZeroMassDeltaMissedCleavage:
        match_type_str = "zero_mass_delta_mc";
        break;
      case DeepProtMatchType::ZeroMassDeltaSemiTryptic:
        match_type_str = "zero_mass_delta_st";
        break;
 
      default:
        throw pappso::PappsoException(
          QObject::tr("DeepProtMatchType unknown :\n%1")
            .arg((std::uint8_t)match_type));
    }
  return match_type_str;
}

References pappso::DeltaPosition, pappso::NoDeltaPosition, pappso::uncategorized, pappso::ZeroMassDelta, pappso::ZeroMassDeltaMissedCleavage, and pappso::ZeroMassDeltaSemiTryptic.

Referenced by pappso::MzIdentMlWriter::writeUserParam(), and pappso::MzIdentMlWriter::writeUserParam().

toString() [2/2]

const QString pappso::DeepProtEnumStr::toString ( pappso::DeepProtPeptideCandidateStatus status )

static

Definition at line 149 of file deepprotenum.cpp.

{
 
  QString status_str;
  switch(status)
    {
      case DeepProtPeptideCandidateStatus::CterRemoval:
        status_str = "cter_removal";
        break;
      case DeepProtPeptideCandidateStatus::DeltaPosition:
        status_str = "delta_position";
        break;
      case DeepProtPeptideCandidateStatus::MissedCleavage:
        status_str = "missed_cleavage";
        break;
      case DeepProtPeptideCandidateStatus::NoDeltaPosition:
        status_str = "no_delta_position";
        break;
      case DeepProtPeptideCandidateStatus::NterRemoval:
        status_str = "nter_removal";
        break;
      case DeepProtPeptideCandidateStatus::ZeroMassDelta:
        status_str = "zero_mass_delta";
        break;
 
      default:
        throw pappso::PappsoException(
          QObject::tr("DeepProtPeptideCandidateStatus unknown :\n%1")
            .arg((std::uint8_t)status));
    }
 
  return status_str;
}

References pappso::CterRemoval, pappso::DeltaPosition, pappso::MissedCleavage, pappso::NoDeltaPosition, pappso::NterRemoval, and pappso::ZeroMassDelta.

---

The documentation for this class was generated from the following files:

• pappsomspp/core/psm/deepprot/deepprotenum.h
• pappsomspp/core/psm/deepprot/deepprotenum.cpp