| addAaPosition(uint8_t aa, const std::size_t r_peak, const std::size_t l_peak, const std::size_t next_l_peak, bool l_support) | pappso::specpeptidoms::SpOMSSpectrum | |
| addSupportedPeak(std::size_t peak) | pappso::specpeptidoms::SpOMSSpectrum | private |
| computeCondition(const std::size_t l_peak, bool l_support) const | pappso::specpeptidoms::SpOMSSpectrum | private |
| correctPeakIndexes() | pappso::specpeptidoms::SpOMSSpectrum | private |
| fillComplementaryPeakIndexes() | pappso::specpeptidoms::SpOMSSpectrum | private |
| getAaPositions(pappso::Enums::AminoAcidChar aa) const | pappso::specpeptidoms::SpOMSSpectrum | |
| getAaPositions(pappso::Enums::AminoAcidChar aa, std::vector< std::size_t > peaks_to_remove) const | pappso::specpeptidoms::SpOMSSpectrum | |
| getComplementaryPeak(std::size_t peak) const | pappso::specpeptidoms::SpOMSSpectrum | |
| getMassList() const | pappso::specpeptidoms::SpOMSSpectrum | |
| getMissingMass(std::size_t peak) const | pappso::specpeptidoms::SpOMSSpectrum | |
| getMZShift(std::size_t l_peak, std::size_t r_peak) const | pappso::specpeptidoms::SpOMSSpectrum | |
| getPrecursorCharge() const | pappso::specpeptidoms::SpOMSSpectrum | |
| m_aaCode | pappso::specpeptidoms::SpOMSSpectrum | private |
| m_aapositions | pappso::specpeptidoms::SpOMSSpectrum | private |
| m_complementary_peak_indexes | pappso::specpeptidoms::SpOMSSpectrum | private |
| m_precision_ptr | pappso::specpeptidoms::SpOMSSpectrum | private |
| m_precursor_mass_error | pappso::specpeptidoms::SpOMSSpectrum | private |
| m_qualifiedMassSpectrum | pappso::specpeptidoms::SpOMSSpectrum | private |
| m_reindexed_peaks | pappso::specpeptidoms::SpOMSSpectrum | private |
| m_supported_peaks | pappso::specpeptidoms::SpOMSSpectrum | private |
| peakType(std::size_t indice) const | pappso::specpeptidoms::SpOMSSpectrum | |
| preprocessSpectrum() | pappso::specpeptidoms::SpOMSSpectrum | private |
| removeUnsupportedMasses() | pappso::specpeptidoms::SpOMSSpectrum | private |
| SpOMSSpectrum(pappso::QualifiedMassSpectrum &qmass_spectrum, pappso::PrecisionPtr precision_ptr, const pappso::AaCode &aaCode) | pappso::specpeptidoms::SpOMSSpectrum | |
| SpOMSSpectrum(const SpOMSSpectrum &other) | pappso::specpeptidoms::SpOMSSpectrum | |
| SpOMSSpectrum(const SpOMSSpectrum &other, double precursor_mass_error) | pappso::specpeptidoms::SpOMSSpectrum | |
| ~SpOMSSpectrum() | pappso::specpeptidoms::SpOMSSpectrum | virtual |