addAaPosition(uint8_t aa, const std::size_t r_peak, const std::size_t l_peak, const std::size_t next_l_peak, bool l_support) | pappso::specpeptidoms::SpOMSSpectrum | |
addSupportedPeak(std::size_t peak) | pappso::specpeptidoms::SpOMSSpectrum | private |
computeCondition(const std::size_t l_peak, bool l_support) const | pappso::specpeptidoms::SpOMSSpectrum | private |
correctPeakIndexes() | pappso::specpeptidoms::SpOMSSpectrum | private |
fillComplementaryPeakIndexes() | pappso::specpeptidoms::SpOMSSpectrum | private |
getAaPositions(pappso::Enums::AminoAcidChar aa) const | pappso::specpeptidoms::SpOMSSpectrum | |
getAaPositions(pappso::Enums::AminoAcidChar aa, std::vector< std::size_t > peaks_to_remove) const | pappso::specpeptidoms::SpOMSSpectrum | |
getComplementaryPeak(std::size_t peak) const | pappso::specpeptidoms::SpOMSSpectrum | |
getMassList() const | pappso::specpeptidoms::SpOMSSpectrum | |
getMissingMass(std::size_t peak) const | pappso::specpeptidoms::SpOMSSpectrum | |
getMZShift(std::size_t l_peak, std::size_t r_peak) const | pappso::specpeptidoms::SpOMSSpectrum | |
getPrecursorCharge() const | pappso::specpeptidoms::SpOMSSpectrum | |
m_aaCode | pappso::specpeptidoms::SpOMSSpectrum | private |
m_aapositions | pappso::specpeptidoms::SpOMSSpectrum | private |
m_complementary_peak_indexes | pappso::specpeptidoms::SpOMSSpectrum | private |
m_precision_ptr | pappso::specpeptidoms::SpOMSSpectrum | private |
m_precursor_mass_error | pappso::specpeptidoms::SpOMSSpectrum | private |
m_qualifiedMassSpectrum | pappso::specpeptidoms::SpOMSSpectrum | private |
m_reindexed_peaks | pappso::specpeptidoms::SpOMSSpectrum | private |
m_supported_peaks | pappso::specpeptidoms::SpOMSSpectrum | private |
peakType(std::size_t indice) const | pappso::specpeptidoms::SpOMSSpectrum | |
preprocessSpectrum() | pappso::specpeptidoms::SpOMSSpectrum | private |
removeUnsupportedMasses() | pappso::specpeptidoms::SpOMSSpectrum | private |
SpOMSSpectrum(pappso::QualifiedMassSpectrum &qmass_spectrum, pappso::PrecisionPtr precision_ptr, const pappso::AaCode &aaCode) | pappso::specpeptidoms::SpOMSSpectrum | |
SpOMSSpectrum(const SpOMSSpectrum &other) | pappso::specpeptidoms::SpOMSSpectrum | |
SpOMSSpectrum(const SpOMSSpectrum &other, double precursor_mass_error) | pappso::specpeptidoms::SpOMSSpectrum | |
~SpOMSSpectrum() | pappso::specpeptidoms::SpOMSSpectrum | virtual |