libpappsomspp
Library for mass spectrometry
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pappso::masschroq::Peptide Member List

This is the complete list of members for pappso::masschroq::Peptide, including all inherited members.

addAlignedPeakMeasurement(const PeptideMeasurements::Measurement &one_xic_measure, const pappso::MsRunRetentionTime< QString > &msrun_retention_time)pappso::masschroq::Peptide
addAlignedPeptideObservation(const PeptideObservation &peptide_observation, const pappso::MsRunRetentionTime< QString > &msrun_retention_time)pappso::masschroq::Peptide
addMsRunXicCoordCharge(const MsRunXicCoordCharge &msrun_xic_coord)pappso::masschroq::Peptide
addObservedChargeState(std::uint8_t charge)pappso::masschroq::Peptide
addObservedInMsRunSp(const MsRunSp &msrun_sp)pappso::masschroq::Peptide
computeConsensusRetentionTime()pappso::masschroq::Peptide
computeIsotopologues(double ni_min_abundance) overridepappso::masschroq::Peptidevirtual
getAllObservedChargeStateList() constpappso::masschroq::Peptide
getBestIonMobilityXicCoordToExtractOverallMsRunGroup(const MsRunGroup &msrun_group, const pappso::MsRunId &targeted_msrun, std::uint8_t charge) constpappso::masschroq::Peptide
getBestXicCoordSPtrForChargeInMsRunGroup(const MsRunGroup *msrun_group_p, std::uint8_t charge) constpappso::masschroq::Peptide
getConsensusMs2RetentionTime() constpappso::masschroq::Peptide
getConsensusPeakRetentionTime() constpappso::masschroq::Peptide
getId() constpappso::masschroq::Peptide
getMods() constpappso::masschroq::Peptide
getPappsoPeptideSp() constpappso::masschroq::PeptideBasevirtual
getPeptideLabelMap() constpappso::masschroq::Peptide
getPeptideLabelPtr(const QString &label) constpappso::masschroq::Peptide
getPeptideNaturalIsotopeAverageSpList(pappso::PrecisionPtr precision, std::uint8_t charge, double ni_min_abundance)pappso::masschroq::PeptideBasevirtual
getPeptideNaturalIsotopeList() constpappso::masschroq::PeptideBasevirtual
getProteinSpList() constpappso::masschroq::Peptide
isObservedInMsRunSp(const MsRun *msrun_p)pappso::masschroq::Peptide
m_alignedPeakPositionElementListpappso::masschroq::Peptideprivate
m_allObservedChargeStateListpappso::masschroq::Peptideprivate
m_consensusAlignedMs2RetentionTimepappso::masschroq::Peptideprivate
m_consensusAlignedPeakRetentionTimepappso::masschroq::Peptideprivate
m_idpappso::masschroq::Peptideprivate
m_modspappso::masschroq::Peptideprivate
m_msRunXicCoordChargeListpappso::masschroq::Peptideprivate
m_mutexpappso::masschroq::PeptideBaseprotected
m_niMinAbundancepappso::masschroq::PeptideBaseprotected
m_observedInMsRunSpListpappso::masschroq::Peptideprivate
m_peptideLabelMappappso::masschroq::Peptideprivate
m_peptideNaturalIsotopeAverageSpListByChargepappso::masschroq::PeptideBaseprotected
m_proteinSpListpappso::masschroq::Peptideprivate
m_referenceMs2ObservationListpappso::masschroq::Peptideprivate
mp_referenceMsRunRetentionTimepappso::masschroq::Peptideprivate
mpa_peptideNaturalIsotopeListpappso::masschroq::PeptideBaseprotected
msp_peptidepappso::masschroq::PeptideBaseprotected
Peptide(const QString &id, const pappso::PeptideSp &peptide_sp, const std::vector< ProteinSp > &protein_list)pappso::masschroq::Peptide
Peptide(const Peptide &other)pappso::masschroq::Peptide
PeptideBase(const pappso::PeptideSp &peptide_sp)pappso::masschroq::PeptideBase
populateIonMobilityGrid(pappso::IonMobilityGrid *ion_mobility_grid_p) constpappso::masschroq::Peptide
setJsonLabelList(const QJsonObject &json_label_list)pappso::masschroq::Peptide
setMods(const QString &mods)pappso::masschroq::Peptide
setReferenceMsRunRetentionTimePtr(const pappso::MsRunRetentionTime< QString > *msrun_retention_time_reference_p)pappso::masschroq::Peptide
~Peptide()pappso::masschroq::Peptidevirtual
~PeptideBase()pappso::masschroq::PeptideBasevirtual