libpappsomspp
Library for mass spectrometry
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pappso::cbor::psm::PsmSpecPeptidOms Member List

This is the complete list of members for pappso::cbor::psm::PsmSpecPeptidOms, including all inherited members.

CborScanMapBasepappso::cbor::psm::PsmFileScanProcessprivate
CborStreamReaderInterface()pappso::cbor::CborStreamReaderInterface
clearScanBuffer()pappso::cbor::psm::PsmFileScanProcessprotected
close() overridepappso::cbor::psm::PsmFileScanProcessAndCopyvirtual
currentProteinRefListContainsDecoy() constpappso::cbor::psm::PsmFileReaderBaseprotected
currentProteinRefListContainsTarget() constpappso::cbor::psm::PsmFileReaderBaseprotected
fastaFilesReady(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
filterMassSpectrum(pappso::MassSpectrum &mass_spectrum) constpappso::cbor::psm::PsmSpecPeptidOms
getAaCode() constpappso::cbor::psm::PsmSpecPeptidOms
getCurrentPsmPeptideSp() constpappso::cbor::psm::PsmFileReaderBaseprotected
getCurrentQualifiedMassSpectrumSPtr() constpappso::cbor::psm::PsmFileReaderBaseprotected
getExpectedString()pappso::cbor::CborStreamReaderInterfaceprotected
getPrecursorMass(double mz_prec, uint charge) constpappso::cbor::psm::PsmFileReaderBaseprotected
informationsReady(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
initCborReader(QFile *pcborfile)pappso::cbor::CborStreamReaderInterfaceprotected
logReady(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
m_aaCodepappso::cbor::psm::PsmSpecPeptidOmsprotected
m_bufferScanSizepappso::cbor::psm::PsmFileScanProcessprotected
m_cborInformationspappso::cbor::psm::PsmFileReaderBaseprotected
m_cborLogpappso::cbor::psm::PsmFileReaderBaseprotected
m_cborParameterMappappso::cbor::psm::PsmFileReaderBaseprotected
m_cborScanIdpappso::cbor::psm::PsmFileReaderBaseprotected
m_cborScanListpappso::cbor::psm::PsmFileScanProcessprotected
m_cborScanMs2pappso::cbor::psm::PsmFileReaderBaseprotected
m_cborScanPrecursorpappso::cbor::psm::PsmFileReaderBaseprotected
m_cborScanPsmEvalpappso::cbor::psm::PsmFileReaderBaseprotected
m_currentIdentificationFileListpappso::cbor::psm::PsmFileReaderBaseprotected
m_currentPeaklistFilepappso::cbor::psm::PsmFileReaderBaseprotected
m_currentPsmProformapappso::cbor::psm::PsmFileReaderBaseprotected
m_currentPsmProteinRefListpappso::cbor::psm::PsmFileReaderBaseprotected
m_currentSampleNamepappso::cbor::psm::PsmFileReaderBaseprotected
m_datapappso::cbor::CborStreamReaderInterfaceprotected
m_decoyFastaFilespappso::cbor::psm::PsmFileReaderBaseprotected
m_deisotopepappso::cbor::psm::PsmSpecPeptidOmsprotected
m_expectedStringpappso::cbor::CborStreamReaderInterfaceprotected
m_fragmentTolerancepappso::cbor::psm::PsmSpecPeptidOmsprotected
m_minimumMzpappso::cbor::psm::PsmSpecPeptidOmsprotected
m_nMostIntensepappso::cbor::psm::PsmSpecPeptidOmsprotected
m_operationpappso::cbor::psm::PsmFileScanProcessAndCopyprotected
m_proteinMappappso::cbor::psm::PsmFileReaderBaseprotected
m_specpeptidomsParameterspappso::cbor::psm::PsmSpecPeptidOmsprotected
m_targetFastaFilespappso::cbor::psm::PsmFileReaderBaseprotected
mp_cborOutputpappso::cbor::psm::PsmFileScanProcessAndCopyprotected
mpa_cborReaderpappso::cbor::CborStreamReaderInterfaceprotected
newCborScanMap() overridepappso::cbor::psm::PsmSpecPeptidOmsprotectedvirtual
parameterMapReady(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmSpecPeptidOmsprotectedvirtual
processBufferScan(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileScanProcessprotectedvirtual
processBufferScanDone(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
proteinMapReady(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
PsmFileReaderBase()pappso::cbor::psm::PsmFileReaderBase
PsmFileScanProcess(std::size_t buffer_scan_size)pappso::cbor::psm::PsmFileScanProcess
PsmFileScanProcessAndCopy(std::size_t buffer_scan_size, CborStreamWriter *cbor_output_p, const QString &operation)pappso::cbor::psm::PsmFileScanProcessAndCopy
psmReady(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
PsmSpecPeptidOms(std::size_t buffer_scan_size, CborStreamWriter *cbor_output_p, const QJsonObject &parameters)pappso::cbor::psm::PsmSpecPeptidOms
readCbor(QFile *cborp, pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBase
readInformations(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
readLog(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
readParameterMap(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
readProteinMap(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
readPsm(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
readPsmFile(bool &is_ok)pappso::cbor::psm::PsmFileReaderBaseprotected
readPsmProteinRef(bool &is_ok)pappso::cbor::psm::PsmFileReaderBaseprotected
readRoot(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotected
readSample(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
readScan(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessprotectedvirtual
sampleFinished(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
sampleListFinished(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
sampleListStarted(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
sampleStarted(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessAndCopyprotectedvirtual
scanFinished(pappso::UiMonitorInterface &monitor) overridepappso::cbor::psm::PsmFileScanProcessprotectedvirtual
scanStarted(pappso::UiMonitorInterface &monitor)pappso::cbor::psm::PsmFileReaderBaseprotectedvirtual
writePsmFile(CborStreamWriter &writer, const PsmFile &psm_file)pappso::cbor::psm::PsmFileReaderBaseprotected
writePsmFileList(CborStreamWriter &writer, const std::vector< PsmFile > &file_list)pappso::cbor::psm::PsmFileReaderBaseprotected
~CborStreamReaderInterface()pappso::cbor::CborStreamReaderInterfacevirtual
~PsmFileReaderBase()pappso::cbor::psm::PsmFileReaderBasevirtual
~PsmFileScanProcess()pappso::cbor::psm::PsmFileScanProcessvirtual
~PsmFileScanProcessAndCopy()pappso::cbor::psm::PsmFileScanProcessAndCopyvirtual
~PsmSpecPeptidOms()pappso::cbor::psm::PsmSpecPeptidOmsvirtual