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    libpappsomspp
    
   Library for mass spectrometry 
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This is the complete list of members for pappso::TimsFrame, including all inherited members.
| checkScanNum(std::size_t scanNum) const | pappso::TimsFrameBase | |
| combineScansInTofIndexIntensityMap(TimsDataFastMap &rawSpectrum, std::size_t scan_index_begin, std::size_t scan_index_end) const override | pappso::TimsFrame | virtual | 
| combineScansInTofIndexIntensityMap(TimsDataFastMap &tof_index_intensity_map, std::size_t scan_index_begin, std::size_t scan_index_end, quint32 tof_index_begin, quint32 tof_index_end) const override | pappso::TimsFrame | virtual | 
| combineScansToTraceWithDowngradedMzResolution(std::size_t mzindex_merge_window, std::size_t scanNumBegin, std::size_t scanNumEnd, quint32 &mz_minimum_index, quint32 &mz_maximum_index) const override | pappso::TimsFrame | virtual | 
| combineScansToTraceWithDowngradedMzResolution2(std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, std::size_t mobility_scan_begin, std::size_t mobility_scan_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) const override | pappso::TimsFrame | virtual | 
| cumulateScan(std::size_t scanNum, TimsDataFastMap &accumulate_into) const | pappso::TimsFrame | protectedvirtual | 
| cumulateScan2(std::size_t scanNum, TimsDataFastMap &accumulate_into, quint32 accepted_tof_index_range_begin, quint32 accepted_tof_index_range_end) const | pappso::TimsFrame | protectedvirtual | 
| cumulateScanIntensities(std::size_t scanNum) const override | pappso::TimsFrame | virtual | 
| cumulateScanRangeIntensities(std::size_t scanNumBegin, std::size_t scanNumEnd) const override | pappso::TimsFrame | virtual | 
| cumulateScansToTrace(std::size_t scanIndexBegin, std::size_t scanIndexEnd) const override | pappso::TimsFrame | virtual | 
| downgradeResolutionOfTofIndexIntensityPairList(std::size_t tof_index_merge_window, std::vector< TofIndexIntensityPair > &spectrum) const | pappso::TimsFrameBase | protectedvirtual | 
| extractTimsXicListInRtRange(std::vector< XicCoordTims * >::iterator &itXicListbegin, std::vector< XicCoordTims * >::iterator &itXicListend, Enums::XicExtractMethod method) const | pappso::TimsFrame | protected | 
| getDriftTimeInMilliseconds(std::size_t scan_index) const | pappso::TimsFrameBase | |
| getId() const | pappso::TimsFrameBase | |
| getIonMobilityTraceByTofIndexRange(std::size_t tof_index_begin, std::size_t tof_index_end, Enums::XicExtractMethod method, std::size_t scan_index_begin, std::size_t scan_index_end) const | pappso::TimsFrameBase | virtual | 
| getMassSpectrumCstSPtr(std::size_t scan_index) const final | pappso::TimsFrameBase | virtual | 
| getMassSpectrumSPtr(std::size_t scanNum) const override | pappso::TimsFrame | virtual | 
| getMaximumRawMassIndex() const | pappso::TimsFrameBase | virtual | 
| getMobilityScan(std::size_t scanNum, std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) const override | pappso::TimsFrame | virtual | 
| getMsLevel() const | pappso::TimsFrameBase | |
| getMzCalibrationInterfaceSPtr() const final | pappso::TimsFrameBase | virtual | 
| getOneOverK0Transformation(std::size_t scan_index) const | pappso::TimsFrameBase | |
| getRawTraceSPtr(std::size_t scanNum) const | pappso::TimsFrame | protectedvirtual | 
| getRawValuePairList(std::size_t scanNum, quint32 accepted_tof_index_range_begin, quint32 accepted_tof_index_range_end) const | pappso::TimsFrame | virtual | 
| getRtInSeconds() const | pappso::TimsFrameBase | |
| getScanIndexFromOneOverK0(double one_over_k0) const | pappso::TimsFrameBase | |
| getScanIntensityList(std::size_t scanNum) const override | pappso::TimsFrame | virtual | 
| getScanOffset(std::size_t scanNum) const | pappso::TimsFrame | private | 
| getScanPeakCount(std::size_t scanIndex) const override | pappso::TimsFrame | virtual | 
| getScanTofIndexList(std::size_t scanNum) const override | pappso::TimsFrame | virtual | 
| getTotalNumberOfScans() const | pappso::TimsFrameBase | virtual | 
| getTraceFromTofIndexIntensityMap(TimsDataFastMap &accumulated_scans) const | pappso::TimsFrameBase | |
| getVoltageTransformation(std::size_t scanNum) const | pappso::TimsFrameBase | |
| hasSameCalibrationData(const TimsFrameBase &other) const | pappso::TimsFrameBase | virtual | 
| m_acqDurationInMilliseconds | pappso::TimsFrameBase | protected | 
| m_binaryData | pappso::TimsFrame | protected | 
| m_frameId | pappso::TimsFrameBase | protected | 
| m_msMsType | pappso::TimsFrameBase | protected | 
| m_rtInSeconds | pappso::TimsFrameBase | protected | 
| m_scanCount | pappso::TimsFrameBase | protected | 
| m_timsC6 | pappso::TimsFrameBase | protected | 
| m_timsC7 | pappso::TimsFrameBase | protected | 
| m_timsDvStart | pappso::TimsFrameBase | protected | 
| m_timsNdelay | pappso::TimsFrameBase | protected | 
| m_timsSlope | pappso::TimsFrameBase | protected | 
| m_timsTtrans | pappso::TimsFrameBase | protected | 
| m_timsVmax | pappso::TimsFrameBase | protected | 
| m_timsVmin | pappso::TimsFrameBase | protected | 
| msp_mzCalibration | pappso::TimsFrameBase | protected | 
| setAcqDurationInMilliseconds(double acquisition_duration_ms) | pappso::TimsFrameBase | |
| setMsMsType(quint8 type) | pappso::TimsFrameBase | |
| setMzCalibration(double T1_frame, double T2_frame, double digitizerTimebase, double digitizerDelay, double C0, double C1, double C2, double C3, double C4, double T1_ref, double T2_ref, double dC1, double dC2) | pappso::TimsFrameBase | |
| setMzCalibrationInterfaceSPtr(MzCalibrationInterfaceSPtr mzCalibration) | pappso::TimsFrameBase | |
| setRtInSeconds(double time) | pappso::TimsFrameBase | |
| setTimsCalibration(int tims_model_type, double C0, double C1, double C2, double C3, double C4, double C5, double C6, double C7, double C8, double C9) | pappso::TimsFrameBase | |
| TimsDirectXicExtractor | pappso::TimsFrame | private | 
| TimsFrame(std::size_t timsId, quint32 scanNum, char *p_bytes, std::size_t len) | pappso::TimsFrame | |
| TimsFrame(const TimsFrame &other) | pappso::TimsFrame | |
| TimsFrame(std::size_t timsId, quint32 scanNum) | pappso::TimsFrame | protected | 
| TimsFrameBase(std::size_t frameId, quint32 scanCount) | pappso::TimsFrameBase | |
| TimsFrameBase(const TimsFrameBase &other) | pappso::TimsFrameBase | |
| unshufflePacket(const char *src) | pappso::TimsFrame | private | 
| ~TimsFrame() | pappso::TimsFrame | virtual | 
| ~TimsFrameBase() | pappso::TimsFrameBase | virtual |