pappso::PeptideVariableModificationReplacement Member List

This is the complete list of members for pappso::PeptideVariableModificationReplacement, including all inherited members.

addAa(char aa)	pappso::PeptideVariableModificationBuilder
getModificationPositionList(std::vector< unsigned int > &position_list, const QString &peptide_str) final	pappso::PeptideModificatorBase	protectedvirtual
getModificationPositionList(std::vector< unsigned int > &position_list, const Peptide *p_peptide, AaModificationP mod, unsigned int modification_counter)	pappso::PeptideModificatorBase	protectedvirtual
m_aaModificationList	pappso::PeptideVariableModificationBuilder	private
m_isProtCterMod	pappso::PeptideVariableModificationBuilder	protected
m_isProtElseMod	pappso::PeptideVariableModificationBuilder	protected
m_isProtNterMod	pappso::PeptideVariableModificationBuilder	protected
m_maxNumberMod	pappso::PeptideVariableModificationBuilder	protected
m_minNumberMod	pappso::PeptideVariableModificationBuilder	protected
m_modificationCount	pappso::PeptideVariableModificationBuilder	protected
m_pattern	pappso::PeptideModificatorBase	protected
m_sink	pappso::PeptideVariableModificationBuilder	protected
mp_mod	pappso::PeptideVariableModificationBuilder	protected
mp_modAfter	pappso::PeptideVariableModificationReplacement	private
next_combination(const std::vector< unsigned int >::iterator first, std::vector< unsigned int >::iterator k, const std::vector< unsigned int >::iterator last)	pappso::PeptideVariableModificationBuilder	protectedstatic
PeptideModificatorBase()	pappso::PeptideModificatorBase
PeptideVariableModificationBuilder(AaModificationP mod)	pappso::PeptideVariableModificationBuilder
PeptideVariableModificationReplacement(AaModificationP mod_before, AaModificationP mod_after)	pappso::PeptideVariableModificationReplacement
replaceModificationsAtPosition(Peptide &new_peptide, unsigned int position)	pappso::PeptideVariableModificationReplacement	private
setMaxNumberMod(unsigned int max_num)	pappso::PeptideVariableModificationBuilder	inline
setMinNumberMod(unsigned int min_num)	pappso::PeptideVariableModificationBuilder	inline
setModificationCounter(unsigned int counter)	pappso::PeptideVariableModificationBuilder	inline
setModificationPattern(QString &pattern) final	pappso::PeptideModificatorBase	virtual
setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override	pappso::PeptideVariableModificationReplacement	virtual
setProtCter(bool arg1)	pappso::PeptideVariableModificationBuilder	inline
setProtElse(bool arg1)	pappso::PeptideVariableModificationBuilder	inline
setProtNter(bool arg1)	pappso::PeptideVariableModificationBuilder	inline
setSink(PeptideModificatorInterface *sink) override	pappso::PeptideVariableModificationBuilder	inlinevirtual
~PeptideModificatorBase()	pappso::PeptideModificatorBase	virtual
~PeptideModificatorInterface()	pappso::PeptideModificatorInterface	inlinevirtual
~PeptideVariableModificationBuilder()	pappso::PeptideVariableModificationBuilder	virtual
~PeptideVariableModificationReplacement()	pappso::PeptideVariableModificationReplacement	virtual