| accept(MsRunDataSetTreeNodeVisitorInterface &visitor) | pappso::MsRunDataSetTree |  | 
  | accept(MsRunDataSetTreeNodeVisitorInterface &visitor, std::vector< pappso::MsRunDataSetTreeNode * >::const_iterator nodes_begin_iterator, std::vector< pappso::MsRunDataSetTreeNode * >::const_iterator nodes_end_iterator) | pappso::MsRunDataSetTree |  | 
  | addDataSetQualMassSpectraInsideDtOrRtRange(double start, double end, QualMassSpectraVector &mass_spectra, Enums::DataKind data_kind) const | pappso::MsRunDataSetTree |  | 
  | addDataSetTreeNodesInsideDtOrRtRange(double start, double end, NodeVector &nodes, Enums::DataKind data_kind) const | pappso::MsRunDataSetTree |  | 
  | addMassSpectrum(QualifiedMassSpectrumCstSPtr mass_spectrum) | pappso::MsRunDataSetTree |  | 
  | addMassSpectrum(QualifiedMassSpectrumCstSPtr mass_spectrum, MsRunDataSetTreeNode *parent) | pappso::MsRunDataSetTree | private | 
  | addMassSpectrum(QualifiedMassSpectrumCstSPtr mass_spectrum, std::size_t precursor_spectrum_index) | pappso::MsRunDataSetTree | private | 
  | depth() const | pappso::MsRunDataSetTree |  | 
  | documentNodeInDtRtMap(double time, MsRunDataSetTreeNode *node_p, Enums::DataKind data_kind) | pappso::MsRunDataSetTree | private | 
  | DoubleNodeVectorMap typedef | pappso::MsRunDataSetTree |  | 
  | findNode(QualifiedMassSpectrumCstSPtr mass_spectrum_csp) const | pappso::MsRunDataSetTree |  | 
  | findNode(std::size_t spectrum_index) const | pappso::MsRunDataSetTree |  | 
  | flattenedView() | pappso::MsRunDataSetTree |  | 
  | flattenedViewMsLevel(std::size_t ms_level, bool with_descendants=false) | pappso::MsRunDataSetTree |  | 
  | getIndexNodeMap() const | pappso::MsRunDataSetTree |  | 
  | getRootNodes() const | pappso::MsRunDataSetTree |  | 
  | getSpectrumCount() const | pappso::MsRunDataSetTree |  | 
  | indexNodeMapSize() const | pappso::MsRunDataSetTree |  | 
  | m_dtDoubleNodeVectorMap | pappso::MsRunDataSetTree | private | 
  | m_indexNodeMap | pappso::MsRunDataSetTree | private | 
  | m_rootNodes | pappso::MsRunDataSetTree | private | 
  | m_rtDoubleNodeVectorMap | pappso::MsRunDataSetTree | private | 
  | m_spectrumCount | pappso::MsRunDataSetTree | private | 
  | massSpectrumIndex(const MsRunDataSetTreeNode *node) const | pappso::MsRunDataSetTree |  | 
  | massSpectrumIndex(QualifiedMassSpectrumCstSPtr qualified_mass_spectrum_csp) const | pappso::MsRunDataSetTree |  | 
  | mcsp_msRunId | pappso::MsRunDataSetTree | private | 
  | MsRunDataSetTree(MsRunIdCstSPtr ms_run_id_csp) | pappso::MsRunDataSetTree |  | 
  | NodeVector typedef | pappso::MsRunDataSetTree |  | 
  | precursorNodeByProductSpectrumIndex(std::size_t product_spectrum_index) | pappso::MsRunDataSetTree |  | 
  | precursorNodesByPrecursorMz(pappso_double mz, PrecisionPtr precision_ptr) | pappso::MsRunDataSetTree |  | 
  | productNodesByPrecursorSpectrumIndex(std::size_t precursor_spectrum_index) | pappso::MsRunDataSetTree |  | 
  | QualMassSpectraVector typedef | pappso::MsRunDataSetTree |  | 
  | removeDataSetQualMassSpectraOutsideDtOrRtRange(double start, double end, QualMassSpectraVector &mass_spectra, Enums::DataKind data_kind) const | pappso::MsRunDataSetTree |  | 
  | removeDataSetTreeNodesOutsideDtOrRtRange(double start, double end, NodeVector &nodes, Enums::DataKind data_kind) const | pappso::MsRunDataSetTree |  | 
  | size() const | pappso::MsRunDataSetTree |  | 
  | ~MsRunDataSetTree() | pappso::MsRunDataSetTree | virtual |